5X6Z
Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0003723 | molecular_function | RNA binding |
| A | 0004484 | molecular_function | mRNA guanylyltransferase activity |
| A | 0005525 | molecular_function | GTP binding |
| A | 0006370 | biological_process | 7-methylguanosine mRNA capping |
| A | 0006397 | biological_process | mRNA processing |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016779 | molecular_function | nucleotidyltransferase activity |
| A | 0030430 | cellular_component | host cell cytoplasm |
| A | 0044423 | cellular_component | virion component |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0003723 | molecular_function | RNA binding |
| B | 0004484 | molecular_function | mRNA guanylyltransferase activity |
| B | 0005525 | molecular_function | GTP binding |
| B | 0006370 | biological_process | 7-methylguanosine mRNA capping |
| B | 0006397 | biological_process | mRNA processing |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016779 | molecular_function | nucleotidyltransferase activity |
| B | 0030430 | cellular_component | host cell cytoplasm |
| B | 0044423 | cellular_component | virion component |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0003723 | molecular_function | RNA binding |
| C | 0004484 | molecular_function | mRNA guanylyltransferase activity |
| C | 0005525 | molecular_function | GTP binding |
| C | 0006370 | biological_process | 7-methylguanosine mRNA capping |
| C | 0006397 | biological_process | mRNA processing |
| C | 0016740 | molecular_function | transferase activity |
| C | 0016779 | molecular_function | nucleotidyltransferase activity |
| C | 0030430 | cellular_component | host cell cytoplasm |
| C | 0044423 | cellular_component | virion component |
| D | 0000166 | molecular_function | nucleotide binding |
| D | 0003723 | molecular_function | RNA binding |
| D | 0004484 | molecular_function | mRNA guanylyltransferase activity |
| D | 0005525 | molecular_function | GTP binding |
| D | 0006370 | biological_process | 7-methylguanosine mRNA capping |
| D | 0006397 | biological_process | mRNA processing |
| D | 0016740 | molecular_function | transferase activity |
| D | 0016779 | molecular_function | nucleotidyltransferase activity |
| D | 0030430 | cellular_component | host cell cytoplasm |
| D | 0044423 | cellular_component | virion component |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 17 |
| Details | binding site for residue GTP C 901 |
| Chain | Residue |
| C | GLN616 |
| C | ASP746 |
| C | ASN747 |
| C | LYS748 |
| C | TRP758 |
| C | HIS759 |
| C | HOH1006 |
| C | HOH1228 |
| D | GDP902 |
| C | LYS627 |
| C | TYR645 |
| C | ARG648 |
| C | ILE701 |
| C | SER702 |
| C | GLY703 |
| C | HIS704 |
| C | TRP722 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | binding site for residue GDP C 902 |
| Chain | Residue |
| C | ASP50 |
| C | SER54 |
| C | GLU134 |
| C | VAL137 |
| D | TYR73 |
| D | ARG77 |
| D | HIS641 |
| D | LYS748 |
| D | GTP901 |
| site_id | AC3 |
| Number of Residues | 17 |
| Details | binding site for residue GTP A 901 |
| Chain | Residue |
| A | GLN616 |
| A | PRO622 |
| A | LYS627 |
| A | TYR645 |
| A | ARG648 |
| A | ILE701 |
| A | SER702 |
| A | GLY703 |
| A | HIS704 |
| A | TRP722 |
| A | ASP746 |
| A | TRP758 |
| A | HIS759 |
| A | HOH1074 |
| A | HOH1097 |
| A | HOH1279 |
| B | GDP902 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue GDP A 902 |
| Chain | Residue |
| A | ASP50 |
| A | MET53 |
| A | SER54 |
| A | GLU134 |
| A | VAL137 |
| B | GTP901 |
| site_id | AC5 |
| Number of Residues | 16 |
| Details | binding site for residue GTP D 901 |
| Chain | Residue |
| C | GDP902 |
| D | GLN616 |
| D | TYR645 |
| D | ARG648 |
| D | ASN700 |
| D | GLY703 |
| D | HIS704 |
| D | TRP722 |
| D | MET726 |
| D | ASN747 |
| D | LYS748 |
| D | TRP758 |
| D | HIS759 |
| D | HOH1035 |
| D | HOH1045 |
| D | HOH1061 |
| site_id | AC6 |
| Number of Residues | 8 |
| Details | binding site for residue GDP D 902 |
| Chain | Residue |
| C | TYR73 |
| C | ARG77 |
| C | TYR645 |
| C | GTP901 |
| D | ASP50 |
| D | SER54 |
| D | GLU134 |
| D | VAL137 |
| site_id | AC7 |
| Number of Residues | 17 |
| Details | binding site for residue GTP B 901 |
| Chain | Residue |
| A | GDP902 |
| B | GLN616 |
| B | PRO622 |
| B | TYR645 |
| B | ARG648 |
| B | ILE701 |
| B | SER702 |
| B | GLY703 |
| B | HIS704 |
| B | TRP722 |
| B | ASP746 |
| B | ASN747 |
| B | LYS748 |
| B | TRP758 |
| B | HIS759 |
| B | HOH1130 |
| B | HOH1145 |
| site_id | AC8 |
| Number of Residues | 8 |
| Details | binding site for residue GDP B 902 |
| Chain | Residue |
| A | ARG77 |
| A | GTP901 |
| B | ASP50 |
| B | MET53 |
| B | SER54 |
| B | GLU134 |
| B | VAL137 |
| B | HOH1183 |
