Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5X4Z

RNA Polymerase II from Komagataella Pastoris (Type-1 crystal)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000428	cellular_component	DNA-directed RNA polymerase complex
A	0000785	cellular_component	chromatin
A	0001172	biological_process	RNA-templated transcription
A	0003677	molecular_function	DNA binding
A	0003899	molecular_function	DNA-directed RNA polymerase activity
A	0003968	molecular_function	RNA-directed RNA polymerase activity
A	0005634	cellular_component	nucleus
A	0005665	cellular_component	RNA polymerase II, core complex
A	0006325	biological_process	chromatin organization
A	0006351	biological_process	DNA-templated transcription
A	0006366	biological_process	transcription by RNA polymerase II
A	0006367	biological_process	transcription initiation at RNA polymerase II promoter
A	0006368	biological_process	transcription elongation by RNA polymerase II
A	0006369	biological_process	termination of RNA polymerase II transcription
A	0016740	molecular_function	transferase activity
A	0016779	molecular_function	nucleotidyltransferase activity
A	0019985	biological_process	translesion synthesis
A	0030643	biological_process	intracellular phosphate ion homeostasis
A	0034062	molecular_function	5'-3' RNA polymerase activity
A	0046872	molecular_function	metal ion binding
A	0140463	molecular_function	chromatin-protein adaptor activity
A	0180034	biological_process	co-transcriptional lncRNA 3' end processing, cleavage and polyadenylation pathway
B	0000428	cellular_component	DNA-directed RNA polymerase complex
B	0001172	biological_process	RNA-templated transcription
B	0003676	molecular_function	nucleic acid binding
B	0003677	molecular_function	DNA binding
B	0003723	molecular_function	RNA binding
B	0003899	molecular_function	DNA-directed RNA polymerase activity
B	0003968	molecular_function	RNA-directed RNA polymerase activity
B	0005634	cellular_component	nucleus
B	0005665	cellular_component	RNA polymerase II, core complex
B	0005721	cellular_component	pericentric heterochromatin
B	0006351	biological_process	DNA-templated transcription
B	0006366	biological_process	transcription by RNA polymerase II
B	0006367	biological_process	transcription initiation at RNA polymerase II promoter
B	0006368	biological_process	transcription elongation by RNA polymerase II
B	0008270	molecular_function	zinc ion binding
B	0016740	molecular_function	transferase activity
B	0016779	molecular_function	nucleotidyltransferase activity
B	0032549	molecular_function	ribonucleoside binding
B	0034062	molecular_function	5'-3' RNA polymerase activity
B	0046872	molecular_function	metal ion binding
B	0140727	biological_process	siRNA-mediated pericentric heterochromatin formation
C	0000428	cellular_component	DNA-directed RNA polymerase complex
C	0001172	biological_process	RNA-templated transcription
C	0003677	molecular_function	DNA binding
C	0003899	molecular_function	DNA-directed RNA polymerase activity
C	0003968	molecular_function	RNA-directed RNA polymerase activity
C	0005634	cellular_component	nucleus
C	0005654	cellular_component	nucleoplasm
C	0005665	cellular_component	RNA polymerase II, core complex
C	0006351	biological_process	DNA-templated transcription
C	0006366	biological_process	transcription by RNA polymerase II
C	0006367	biological_process	transcription initiation at RNA polymerase II promoter
C	0006368	biological_process	transcription elongation by RNA polymerase II
C	0006369	biological_process	termination of RNA polymerase II transcription
C	0046872	molecular_function	metal ion binding
C	0046983	molecular_function	protein dimerization activity
D	0000166	molecular_function	nucleotide binding
D	0000288	biological_process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
D	0000932	cellular_component	P-body
D	0001172	biological_process	RNA-templated transcription
D	0003697	molecular_function	single-stranded DNA binding
D	0003727	molecular_function	single-stranded RNA binding
D	0003899	molecular_function	DNA-directed RNA polymerase activity
D	0003968	molecular_function	RNA-directed RNA polymerase activity
D	0005634	cellular_component	nucleus
D	0005665	cellular_component	RNA polymerase II, core complex
D	0005737	cellular_component	cytoplasm
D	0006352	biological_process	DNA-templated transcription initiation
D	0006366	biological_process	transcription by RNA polymerase II
D	0006367	biological_process	transcription initiation at RNA polymerase II promoter
D	0006368	biological_process	transcription elongation by RNA polymerase II
D	0030880	cellular_component	RNA polymerase complex
D	0031369	molecular_function	translation initiation factor binding
D	0045948	biological_process	positive regulation of translational initiation
D	1990328	cellular_component	RPB4-RPB7 complex
E	0001172	biological_process	RNA-templated transcription
E	0003677	molecular_function	DNA binding
E	0003899	molecular_function	DNA-directed RNA polymerase activity
E	0003968	molecular_function	RNA-directed RNA polymerase activity
E	0005634	cellular_component	nucleus
E	0005665	cellular_component	RNA polymerase II, core complex
E	0005666	cellular_component	RNA polymerase III complex
E	0005736	cellular_component	RNA polymerase I complex
E	0006351	biological_process	DNA-templated transcription
E	0006360	biological_process	transcription by RNA polymerase I
E	0006361	biological_process	transcription initiation at RNA polymerase I promoter
E	0006362	biological_process	transcription elongation by RNA polymerase I
E	0006363	biological_process	termination of RNA polymerase I transcription
E	0006366	biological_process	transcription by RNA polymerase II
E	0006367	biological_process	transcription initiation at RNA polymerase II promoter
E	0006368	biological_process	transcription elongation by RNA polymerase II
E	0006383	biological_process	transcription by RNA polymerase III
E	0006384	biological_process	transcription initiation at RNA polymerase III promoter
E	0006386	biological_process	termination of RNA polymerase III transcription
E	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
E	0042797	biological_process	tRNA transcription by RNA polymerase III
F	0000428	cellular_component	DNA-directed RNA polymerase complex
F	0003677	molecular_function	DNA binding
F	0003899	molecular_function	DNA-directed RNA polymerase activity
F	0005634	cellular_component	nucleus
F	0005665	cellular_component	RNA polymerase II, core complex
F	0005666	cellular_component	RNA polymerase III complex
F	0005736	cellular_component	RNA polymerase I complex
F	0006351	biological_process	DNA-templated transcription
F	0006360	biological_process	transcription by RNA polymerase I
F	0006362	biological_process	transcription elongation by RNA polymerase I
F	0006366	biological_process	transcription by RNA polymerase II
F	0042797	biological_process	tRNA transcription by RNA polymerase III
G	0000428	cellular_component	DNA-directed RNA polymerase complex
G	0000932	cellular_component	P-body
G	0000956	biological_process	nuclear-transcribed mRNA catabolic process
G	0001172	biological_process	RNA-templated transcription
G	0003676	molecular_function	nucleic acid binding
G	0003697	molecular_function	single-stranded DNA binding
G	0003727	molecular_function	single-stranded RNA binding
G	0003968	molecular_function	RNA-directed RNA polymerase activity
G	0005634	cellular_component	nucleus
G	0005665	cellular_component	RNA polymerase II, core complex
G	0005737	cellular_component	cytoplasm
G	0006351	biological_process	DNA-templated transcription
G	0006352	biological_process	DNA-templated transcription initiation
G	0006366	biological_process	transcription by RNA polymerase II
G	0006367	biological_process	transcription initiation at RNA polymerase II promoter
G	0006368	biological_process	transcription elongation by RNA polymerase II
G	0010590	biological_process	regulation of septum digestion after cytokinesis
G	0031369	molecular_function	translation initiation factor binding
G	0045948	biological_process	positive regulation of translational initiation
G	0060213	biological_process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
G	1990328	cellular_component	RPB4-RPB7 complex
H	0001172	biological_process	RNA-templated transcription
H	0003899	molecular_function	DNA-directed RNA polymerase activity
H	0003968	molecular_function	RNA-directed RNA polymerase activity
H	0005634	cellular_component	nucleus
H	0005654	cellular_component	nucleoplasm
H	0005665	cellular_component	RNA polymerase II, core complex
H	0005666	cellular_component	RNA polymerase III complex
H	0005736	cellular_component	RNA polymerase I complex
H	0006351	biological_process	DNA-templated transcription
H	0006360	biological_process	transcription by RNA polymerase I
H	0006361	biological_process	transcription initiation at RNA polymerase I promoter
H	0006362	biological_process	transcription elongation by RNA polymerase I
H	0006363	biological_process	termination of RNA polymerase I transcription
H	0006366	biological_process	transcription by RNA polymerase II
H	0006367	biological_process	transcription initiation at RNA polymerase II promoter
H	0006368	biological_process	transcription elongation by RNA polymerase II
H	0006383	biological_process	transcription by RNA polymerase III
H	0006384	biological_process	transcription initiation at RNA polymerase III promoter
H	0006386	biological_process	termination of RNA polymerase III transcription
H	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
H	0042797	biological_process	tRNA transcription by RNA polymerase III
I	0000428	cellular_component	DNA-directed RNA polymerase complex
I	0001193	biological_process	maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II
I	0003676	molecular_function	nucleic acid binding
I	0003899	molecular_function	DNA-directed RNA polymerase activity
I	0005665	cellular_component	RNA polymerase II, core complex
I	0005730	cellular_component	nucleolus
I	0006283	biological_process	transcription-coupled nucleotide-excision repair
I	0006351	biological_process	DNA-templated transcription
I	0006367	biological_process	transcription initiation at RNA polymerase II promoter
I	0008270	molecular_function	zinc ion binding
I	0046872	molecular_function	metal ion binding
J	0000428	cellular_component	DNA-directed RNA polymerase complex
J	0003677	molecular_function	DNA binding
J	0003899	molecular_function	DNA-directed RNA polymerase activity
J	0005634	cellular_component	nucleus
J	0005665	cellular_component	RNA polymerase II, core complex
J	0005666	cellular_component	RNA polymerase III complex
J	0005736	cellular_component	RNA polymerase I complex
J	0006351	biological_process	DNA-templated transcription
J	0006360	biological_process	transcription by RNA polymerase I
J	0006366	biological_process	transcription by RNA polymerase II
J	0008270	molecular_function	zinc ion binding
J	0042797	biological_process	tRNA transcription by RNA polymerase III
J	0046872	molecular_function	metal ion binding
K	0000428	cellular_component	DNA-directed RNA polymerase complex
K	0001172	biological_process	RNA-templated transcription
K	0003677	molecular_function	DNA binding
K	0003899	molecular_function	DNA-directed RNA polymerase activity
K	0003968	molecular_function	RNA-directed RNA polymerase activity
K	0005634	cellular_component	nucleus
K	0005665	cellular_component	RNA polymerase II, core complex
K	0006351	biological_process	DNA-templated transcription
K	0006366	biological_process	transcription by RNA polymerase II
K	0006367	biological_process	transcription initiation at RNA polymerase II promoter
K	0006368	biological_process	transcription elongation by RNA polymerase II
K	0006369	biological_process	termination of RNA polymerase II transcription
K	0046983	molecular_function	protein dimerization activity
L	0001172	biological_process	RNA-templated transcription
L	0003677	molecular_function	DNA binding
L	0003899	molecular_function	DNA-directed RNA polymerase activity
L	0003968	molecular_function	RNA-directed RNA polymerase activity
L	0005634	cellular_component	nucleus
L	0005665	cellular_component	RNA polymerase II, core complex
L	0005666	cellular_component	RNA polymerase III complex
L	0005736	cellular_component	RNA polymerase I complex
L	0005777	cellular_component	peroxisome
L	0006351	biological_process	DNA-templated transcription
L	0006360	biological_process	transcription by RNA polymerase I
L	0006361	biological_process	transcription initiation at RNA polymerase I promoter
L	0006362	biological_process	transcription elongation by RNA polymerase I
L	0006363	biological_process	termination of RNA polymerase I transcription
L	0006366	biological_process	transcription by RNA polymerase II
L	0006367	biological_process	transcription initiation at RNA polymerase II promoter
L	0006368	biological_process	transcription elongation by RNA polymerase II
L	0006383	biological_process	transcription by RNA polymerase III
L	0006384	biological_process	transcription initiation at RNA polymerase III promoter
L	0006386	biological_process	termination of RNA polymerase III transcription
L	0008270	molecular_function	zinc ion binding
L	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
L	0042797	biological_process	tRNA transcription by RNA polymerase III
L	0046872	molecular_function	metal ion binding
M	0000428	cellular_component	DNA-directed RNA polymerase complex
M	0000785	cellular_component	chromatin
M	0001172	biological_process	RNA-templated transcription
M	0003677	molecular_function	DNA binding
M	0003899	molecular_function	DNA-directed RNA polymerase activity
M	0003968	molecular_function	RNA-directed RNA polymerase activity
M	0005634	cellular_component	nucleus
M	0005665	cellular_component	RNA polymerase II, core complex
M	0006325	biological_process	chromatin organization
M	0006351	biological_process	DNA-templated transcription
M	0006366	biological_process	transcription by RNA polymerase II
M	0006367	biological_process	transcription initiation at RNA polymerase II promoter
M	0006368	biological_process	transcription elongation by RNA polymerase II
M	0006369	biological_process	termination of RNA polymerase II transcription
M	0016740	molecular_function	transferase activity
M	0016779	molecular_function	nucleotidyltransferase activity
M	0019985	biological_process	translesion synthesis
M	0030643	biological_process	intracellular phosphate ion homeostasis
M	0034062	molecular_function	5'-3' RNA polymerase activity
M	0046872	molecular_function	metal ion binding
M	0140463	molecular_function	chromatin-protein adaptor activity
M	0180034	biological_process	co-transcriptional lncRNA 3' end processing, cleavage and polyadenylation pathway
N	0000428	cellular_component	DNA-directed RNA polymerase complex
N	0001172	biological_process	RNA-templated transcription
N	0003676	molecular_function	nucleic acid binding
N	0003677	molecular_function	DNA binding
N	0003723	molecular_function	RNA binding
N	0003899	molecular_function	DNA-directed RNA polymerase activity
N	0003968	molecular_function	RNA-directed RNA polymerase activity
N	0005634	cellular_component	nucleus
N	0005665	cellular_component	RNA polymerase II, core complex
N	0005721	cellular_component	pericentric heterochromatin
N	0006351	biological_process	DNA-templated transcription
N	0006366	biological_process	transcription by RNA polymerase II
N	0006367	biological_process	transcription initiation at RNA polymerase II promoter
N	0006368	biological_process	transcription elongation by RNA polymerase II
N	0008270	molecular_function	zinc ion binding
N	0016740	molecular_function	transferase activity
N	0016779	molecular_function	nucleotidyltransferase activity
N	0032549	molecular_function	ribonucleoside binding
N	0034062	molecular_function	5'-3' RNA polymerase activity
N	0046872	molecular_function	metal ion binding
N	0140727	biological_process	siRNA-mediated pericentric heterochromatin formation
O	0000428	cellular_component	DNA-directed RNA polymerase complex
O	0001172	biological_process	RNA-templated transcription
O	0003677	molecular_function	DNA binding
O	0003899	molecular_function	DNA-directed RNA polymerase activity
O	0003968	molecular_function	RNA-directed RNA polymerase activity
O	0005634	cellular_component	nucleus
O	0005654	cellular_component	nucleoplasm
O	0005665	cellular_component	RNA polymerase II, core complex
O	0006351	biological_process	DNA-templated transcription
O	0006366	biological_process	transcription by RNA polymerase II
O	0006367	biological_process	transcription initiation at RNA polymerase II promoter
O	0006368	biological_process	transcription elongation by RNA polymerase II
O	0006369	biological_process	termination of RNA polymerase II transcription
O	0046872	molecular_function	metal ion binding
O	0046983	molecular_function	protein dimerization activity
P	0000166	molecular_function	nucleotide binding
P	0000288	biological_process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
P	0000932	cellular_component	P-body
P	0001172	biological_process	RNA-templated transcription
P	0003697	molecular_function	single-stranded DNA binding
P	0003727	molecular_function	single-stranded RNA binding
P	0003899	molecular_function	DNA-directed RNA polymerase activity
P	0003968	molecular_function	RNA-directed RNA polymerase activity
P	0005634	cellular_component	nucleus
P	0005665	cellular_component	RNA polymerase II, core complex
P	0005737	cellular_component	cytoplasm
P	0006352	biological_process	DNA-templated transcription initiation
P	0006366	biological_process	transcription by RNA polymerase II
P	0006367	biological_process	transcription initiation at RNA polymerase II promoter
P	0006368	biological_process	transcription elongation by RNA polymerase II
P	0030880	cellular_component	RNA polymerase complex
P	0031369	molecular_function	translation initiation factor binding
P	0045948	biological_process	positive regulation of translational initiation
P	1990328	cellular_component	RPB4-RPB7 complex
Q	0001172	biological_process	RNA-templated transcription
Q	0003677	molecular_function	DNA binding
Q	0003899	molecular_function	DNA-directed RNA polymerase activity
Q	0003968	molecular_function	RNA-directed RNA polymerase activity
Q	0005634	cellular_component	nucleus
Q	0005665	cellular_component	RNA polymerase II, core complex
Q	0005666	cellular_component	RNA polymerase III complex
Q	0005736	cellular_component	RNA polymerase I complex
Q	0006351	biological_process	DNA-templated transcription
Q	0006360	biological_process	transcription by RNA polymerase I
Q	0006361	biological_process	transcription initiation at RNA polymerase I promoter
Q	0006362	biological_process	transcription elongation by RNA polymerase I
Q	0006363	biological_process	termination of RNA polymerase I transcription
Q	0006366	biological_process	transcription by RNA polymerase II
Q	0006367	biological_process	transcription initiation at RNA polymerase II promoter
Q	0006368	biological_process	transcription elongation by RNA polymerase II
Q	0006383	biological_process	transcription by RNA polymerase III
Q	0006384	biological_process	transcription initiation at RNA polymerase III promoter
Q	0006386	biological_process	termination of RNA polymerase III transcription
Q	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
Q	0042797	biological_process	tRNA transcription by RNA polymerase III
R	0000428	cellular_component	DNA-directed RNA polymerase complex
R	0003677	molecular_function	DNA binding
R	0003899	molecular_function	DNA-directed RNA polymerase activity
R	0005634	cellular_component	nucleus
R	0005665	cellular_component	RNA polymerase II, core complex
R	0005666	cellular_component	RNA polymerase III complex
R	0005736	cellular_component	RNA polymerase I complex
R	0006351	biological_process	DNA-templated transcription
R	0006360	biological_process	transcription by RNA polymerase I
R	0006362	biological_process	transcription elongation by RNA polymerase I
R	0006366	biological_process	transcription by RNA polymerase II
R	0042797	biological_process	tRNA transcription by RNA polymerase III
S	0000428	cellular_component	DNA-directed RNA polymerase complex
S	0000932	cellular_component	P-body
S	0000956	biological_process	nuclear-transcribed mRNA catabolic process
S	0001172	biological_process	RNA-templated transcription
S	0003676	molecular_function	nucleic acid binding
S	0003697	molecular_function	single-stranded DNA binding
S	0003727	molecular_function	single-stranded RNA binding
S	0003968	molecular_function	RNA-directed RNA polymerase activity
S	0005634	cellular_component	nucleus
S	0005665	cellular_component	RNA polymerase II, core complex
S	0005737	cellular_component	cytoplasm
S	0006351	biological_process	DNA-templated transcription
S	0006352	biological_process	DNA-templated transcription initiation
S	0006366	biological_process	transcription by RNA polymerase II
S	0006367	biological_process	transcription initiation at RNA polymerase II promoter
S	0006368	biological_process	transcription elongation by RNA polymerase II
S	0010590	biological_process	regulation of septum digestion after cytokinesis
S	0031369	molecular_function	translation initiation factor binding
S	0045948	biological_process	positive regulation of translational initiation
S	0060213	biological_process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
S	1990328	cellular_component	RPB4-RPB7 complex
T	0001172	biological_process	RNA-templated transcription
T	0003899	molecular_function	DNA-directed RNA polymerase activity
T	0003968	molecular_function	RNA-directed RNA polymerase activity
T	0005634	cellular_component	nucleus
T	0005654	cellular_component	nucleoplasm
T	0005665	cellular_component	RNA polymerase II, core complex
T	0005666	cellular_component	RNA polymerase III complex
T	0005736	cellular_component	RNA polymerase I complex
T	0006351	biological_process	DNA-templated transcription
T	0006360	biological_process	transcription by RNA polymerase I
T	0006361	biological_process	transcription initiation at RNA polymerase I promoter
T	0006362	biological_process	transcription elongation by RNA polymerase I
T	0006363	biological_process	termination of RNA polymerase I transcription
T	0006366	biological_process	transcription by RNA polymerase II
T	0006367	biological_process	transcription initiation at RNA polymerase II promoter
T	0006368	biological_process	transcription elongation by RNA polymerase II
T	0006383	biological_process	transcription by RNA polymerase III
T	0006384	biological_process	transcription initiation at RNA polymerase III promoter
T	0006386	biological_process	termination of RNA polymerase III transcription
T	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
T	0042797	biological_process	tRNA transcription by RNA polymerase III
U	0000428	cellular_component	DNA-directed RNA polymerase complex
U	0001193	biological_process	maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II
U	0003676	molecular_function	nucleic acid binding
U	0003899	molecular_function	DNA-directed RNA polymerase activity
U	0005665	cellular_component	RNA polymerase II, core complex
U	0005730	cellular_component	nucleolus
U	0006283	biological_process	transcription-coupled nucleotide-excision repair
U	0006351	biological_process	DNA-templated transcription
U	0006367	biological_process	transcription initiation at RNA polymerase II promoter
U	0008270	molecular_function	zinc ion binding
U	0046872	molecular_function	metal ion binding
V	0000428	cellular_component	DNA-directed RNA polymerase complex
V	0003677	molecular_function	DNA binding
V	0003899	molecular_function	DNA-directed RNA polymerase activity
V	0005634	cellular_component	nucleus
V	0005665	cellular_component	RNA polymerase II, core complex
V	0005666	cellular_component	RNA polymerase III complex
V	0005736	cellular_component	RNA polymerase I complex
V	0006351	biological_process	DNA-templated transcription
V	0006360	biological_process	transcription by RNA polymerase I
V	0006366	biological_process	transcription by RNA polymerase II
V	0008270	molecular_function	zinc ion binding
V	0042797	biological_process	tRNA transcription by RNA polymerase III
V	0046872	molecular_function	metal ion binding
W	0000428	cellular_component	DNA-directed RNA polymerase complex
W	0001172	biological_process	RNA-templated transcription
W	0003677	molecular_function	DNA binding
W	0003899	molecular_function	DNA-directed RNA polymerase activity
W	0003968	molecular_function	RNA-directed RNA polymerase activity
W	0005634	cellular_component	nucleus
W	0005665	cellular_component	RNA polymerase II, core complex
W	0006351	biological_process	DNA-templated transcription
W	0006366	biological_process	transcription by RNA polymerase II
W	0006367	biological_process	transcription initiation at RNA polymerase II promoter
W	0006368	biological_process	transcription elongation by RNA polymerase II
W	0006369	biological_process	termination of RNA polymerase II transcription
W	0046983	molecular_function	protein dimerization activity
X	0001172	biological_process	RNA-templated transcription
X	0003677	molecular_function	DNA binding
X	0003899	molecular_function	DNA-directed RNA polymerase activity
X	0003968	molecular_function	RNA-directed RNA polymerase activity
X	0005634	cellular_component	nucleus
X	0005665	cellular_component	RNA polymerase II, core complex
X	0005666	cellular_component	RNA polymerase III complex
X	0005736	cellular_component	RNA polymerase I complex
X	0005777	cellular_component	peroxisome
X	0006351	biological_process	DNA-templated transcription
X	0006360	biological_process	transcription by RNA polymerase I
X	0006361	biological_process	transcription initiation at RNA polymerase I promoter
X	0006362	biological_process	transcription elongation by RNA polymerase I
X	0006363	biological_process	termination of RNA polymerase I transcription
X	0006366	biological_process	transcription by RNA polymerase II
X	0006367	biological_process	transcription initiation at RNA polymerase II promoter
X	0006368	biological_process	transcription elongation by RNA polymerase II
X	0006383	biological_process	transcription by RNA polymerase III
X	0006384	biological_process	transcription initiation at RNA polymerase III promoter
X	0006386	biological_process	termination of RNA polymerase III transcription
X	0008270	molecular_function	zinc ion binding
X	0042790	biological_process	nucleolar large rRNA transcription by RNA polymerase I
X	0042797	biological_process	tRNA transcription by RNA polymerase III
X	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for residue ZN A 1801

Chain	Residue
A	CYS107
A	MET108
A	CYS110
A	CYS148
A	GLY167
A	CYS168

site_id	AC2
Number of Residues	4
Details	binding site for residue ZN A 1802

Chain	Residue
A	HIS80
A	CYS67
A	CYS70
A	CYS77

site_id	AC3
Number of Residues	4
Details	binding site for residue ZN B 1301

Chain	Residue
B	CYS1163
B	ILE1165
B	CYS1166
B	CYS1185

site_id	AC4
Number of Residues	5
Details	binding site for residue ZN C 401

Chain	Residue
C	CYS85
C	CYS87
C	TYR90
C	CYS91
C	CYS94

site_id	AC5
Number of Residues	4
Details	binding site for residue ZN I 201

Chain	Residue
I	CYS7
I	CYS10
I	CYS29
I	CYS32

site_id	AC6
Number of Residues	3
Details	binding site for residue ZN I 202

Chain	Residue
I	CYS75
I	CYS78
I	CYS106

site_id	AC7
Number of Residues	4
Details	binding site for residue ZN J 101

Chain	Residue
J	CYS7
J	CYS10
J	CYS44
J	CYS45

site_id	AC8
Number of Residues	4
Details	binding site for residue ZN L 101

Chain	Residue
L	CYS33
L	CYS36
L	CYS50
L	CYS53

site_id	AC9
Number of Residues	6
Details	binding site for residue ZN M 1801

Chain	Residue
M	CYS107
M	MET108
M	CYS110
M	CYS148
M	GLY167
M	CYS168

site_id	AD1
Number of Residues	4
Details	binding site for residue ZN M 1802

Chain	Residue
M	CYS67
M	CYS70
M	CYS77
M	HIS80

site_id	AD2
Number of Residues	3
Details	binding site for residue ZN N 1301

Chain	Residue
N	CYS1163
N	CYS1166
N	CYS1185

site_id	AD3
Number of Residues	5
Details	binding site for residue ZN O 401

Chain	Residue
O	CYS85
O	CYS87
O	TYR90
O	CYS91
O	CYS94

site_id	AD4
Number of Residues	4
Details	binding site for residue ZN U 201

Chain	Residue
U	CYS7
U	CYS10
U	CYS29
U	CYS32

site_id	AD5
Number of Residues	3
Details	binding site for residue ZN U 202

Chain	Residue
U	CYS75
U	CYS78
U	CYS106

site_id	AD6
Number of Residues	4
Details	binding site for residue ZN V 101

Chain	Residue
V	CYS7
V	CYS10
V	CYS44
V	CYS45

site_id	AD7
Number of Residues	4
Details	binding site for residue ZN X 101

Chain	Residue
X	CYS33
X	CYS36
X	CYS50
X	CYS53

site_id	AD8
Number of Residues	4
Details	binding site for Ligand ILE N 918 bound to THR M 256

Chain	Residue
M	THR256
N	THR916
N	PRO917
N	ARG935

site_id	AD9
Number of Residues	23
Details	binding site for Di-peptide GLU M 255 and ARG N 935

Chain	Residue
M	MET253
M	ASP254
M	THR256
M	THR257
M	ASN931
M	SER932
M	GLU933
M	TYR934
M	GLN936
M	LEU937
M	VAL938
M	SER939
N	GLY251
N	ARG252
N	ASP254
N	GLY256
N	THR882
N	ARG884
N	THR915
N	THR916
N	ILE918
N	LYS934
N	ASP936

Functional Information from PROSITE/UniProt

site_id	PS00115
Number of Residues	7
Details	RNA_POL_II_REPEAT Eukaryotic RNA polymerase II heptapeptide repeat. YSPTSPS

Chain	Residue	Details
A	TYR1560-SER1566
A	TYR1567-SER1573
A	TYR1574-SER1580
A	TYR1581-SER1587
A	TYR1588-SER1594
A	TYR1595-SER1601
A	TYR1602-SER1608
A	TYR1609-SER1615
A	TYR1616-SER1622

site_id	PS00446
Number of Residues	41
Details	RNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSLRRtmlaevptlAidlVeikmNtSvlaDEfIShRLGLIP

Chain	Residue	Details
C	ASN30-PRO70

site_id	PS01030
Number of Residues	27
Details	RNA_POL_M_15KD RNA polymerases M / 15 Kd subunits signature. FCLECNNMLypkedkenqrllysCrnC

Chain	Residue	Details
I	PHE6-CYS32

site_id	PS01110
Number of Residues	14
Details	RNA_POL_H_23KD RNA polymerases H / 23 Kd subunits signature. HELVPKHirLsdGE

Chain	Residue	Details
E	HIS146-GLU159

site_id	PS01111
Number of Residues	15
Details	RNA_POL_K_14KD RNA polymerases K / 14 to 18 Kd subunits signature. TkYErARiLGtRAlQ

Chain	Residue	Details
F	THR86-GLN100

site_id	PS01112
Number of Residues	10
Details	RNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IIPVrCFSCG

Chain	Residue	Details
J	ILE2-GLY11

site_id	PS01154
Number of Residues	32
Details	RNA_POL_L_13KD RNA polymerases L / 13 to 16 Kd subunits signature. FerEdHTLaNlLreeLalypdVtfvaYkveHP

Chain	Residue	Details
K	PHE35-PRO66

site_id	PS01166
Number of Residues	13
Details	RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT

Chain	Residue	Details
B	GLY977-THR989

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)