5WH1
Apo form of the C-terminal region of human Transcription Factor IIB
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0006352 | biological_process | DNA-templated transcription initiation |
A | 0017025 | molecular_function | TBP-class protein binding |
A | 0070897 | biological_process | transcription preinitiation complex assembly |
B | 0006352 | biological_process | DNA-templated transcription initiation |
B | 0017025 | molecular_function | TBP-class protein binding |
B | 0070897 | biological_process | transcription preinitiation complex assembly |
C | 0006352 | biological_process | DNA-templated transcription initiation |
C | 0017025 | molecular_function | TBP-class protein binding |
C | 0070897 | biological_process | transcription preinitiation complex assembly |
D | 0006352 | biological_process | DNA-templated transcription initiation |
D | 0017025 | molecular_function | TBP-class protein binding |
D | 0070897 | biological_process | transcription preinitiation complex assembly |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 401 |
Chain | Residue |
A | ASP282 |
A | VAL283 |
A | ARG286 |
site_id | AC2 |
Number of Residues | 2 |
Details | binding site for residue SO4 A 402 |
Chain | Residue |
A | ARG286 |
A | ARG290 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 403 |
Chain | Residue |
A | TYR259 |
A | GLN263 |
A | THR270 |
A | GLN271 |
site_id | AC4 |
Number of Residues | 2 |
Details | binding site for residue SO4 A 404 |
Chain | Residue |
A | HIS234 |
A | ARG237 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 405 |
Chain | Residue |
A | HIS234 |
A | PHE300 |
A | PRO301 |
A | THR302 |
C | MET107 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 401 |
Chain | Residue |
B | VAL283 |
B | ARG286 |
B | ARG290 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 402 |
Chain | Residue |
B | TYR259 |
B | GLN263 |
B | THR270 |
B | GLN271 |
site_id | AC8 |
Number of Residues | 2 |
Details | binding site for residue SO4 B 403 |
Chain | Residue |
B | HIS234 |
B | ARG237 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue SO4 B 404 |
Chain | Residue |
B | HIS234 |
B | LYS238 |
B | PRO301 |
B | THR302 |
D | MET107 |
site_id | AD1 |
Number of Residues | 2 |
Details | binding site for residue SO4 B 405 |
Chain | Residue |
B | ASP282 |
B | ARG286 |
site_id | AD2 |
Number of Residues | 5 |
Details | binding site for residue SO4 C 401 |
Chain | Residue |
C | TYR259 |
C | GLN263 |
C | THR270 |
C | GLN271 |
C | LYS272 |
site_id | AD3 |
Number of Residues | 3 |
Details | binding site for residue SO4 C 402 |
Chain | Residue |
C | VAL283 |
C | ARG286 |
C | ARG290 |
site_id | AD4 |
Number of Residues | 4 |
Details | binding site for residue SO4 C 403 |
Chain | Residue |
C | ASP282 |
C | VAL283 |
C | ARG286 |
C | SO4408 |
site_id | AD5 |
Number of Residues | 3 |
Details | binding site for residue SO4 C 404 |
Chain | Residue |
C | TYR165 |
C | THR176 |
C | PHE177 |
site_id | AD6 |
Number of Residues | 2 |
Details | binding site for residue SO4 C 405 |
Chain | Residue |
C | SER187 |
C | LYS188 |
site_id | AD7 |
Number of Residues | 2 |
Details | binding site for residue SO4 C 406 |
Chain | Residue |
C | HIS234 |
C | ARG237 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue SO4 C 407 |
Chain | Residue |
C | HIS234 |
C | LYS238 |
C | PRO301 |
C | THR302 |
site_id | AD9 |
Number of Residues | 3 |
Details | binding site for residue SO4 C 408 |
Chain | Residue |
C | ALA281 |
C | ASP282 |
C | SO4403 |
site_id | AE1 |
Number of Residues | 4 |
Details | binding site for residue SO4 D 401 |
Chain | Residue |
D | TYR259 |
D | GLN263 |
D | THR270 |
D | GLN271 |
site_id | AE2 |
Number of Residues | 3 |
Details | binding site for residue SO4 D 402 |
Chain | Residue |
D | VAL283 |
D | ARG286 |
D | ARG290 |
site_id | AE3 |
Number of Residues | 2 |
Details | binding site for residue SO4 D 403 |
Chain | Residue |
D | HIS234 |
D | ARG237 |
site_id | AE4 |
Number of Residues | 3 |
Details | binding site for residue SO4 D 404 |
Chain | Residue |
D | ALA281 |
D | ASP282 |
D | SO4405 |
site_id | AE5 |
Number of Residues | 4 |
Details | binding site for residue SO4 D 405 |
Chain | Residue |
D | ASP282 |
D | VAL283 |
D | ARG286 |
D | SO4404 |
site_id | AE6 |
Number of Residues | 4 |
Details | binding site for residue SO4 D 406 |
Chain | Residue |
D | TYR165 |
D | ARG169 |
D | THR176 |
D | PHE177 |
site_id | AE7 |
Number of Residues | 2 |
Details | binding site for residue SO4 D 407 |
Chain | Residue |
D | SER187 |
D | LYS188 |
site_id | AE8 |
Number of Residues | 4 |
Details | binding site for residue SO4 D 408 |
Chain | Residue |
D | HIS234 |
D | LYS238 |
D | PRO301 |
D | THR302 |
Functional Information from PROSITE/UniProt
site_id | PS00782 |
Number of Residues | 16 |
Details | TFIIB Transcription factor TFIIB repeat signature. GRandAIASACLYIAC |
Chain | Residue | Details |
A | GLY153-CYS168 | |
A | GLY247-SER262 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 40 |
Details | BINDING: BINDING => ECO:0000269|PubMed:27193682, ECO:0007744|PDB:5IYD |
Chain | Residue | Details |
A | ARG248 | |
A | LYS272 | |
A | ALA281 | |
A | THR284 | |
A | ARG286 | |
A | ARG290 | |
B | LYS152 | |
B | ARG154 | |
B | LYS189 | |
B | LYS196 | |
B | ARG248 | |
B | LYS272 | |
B | ALA281 | |
B | THR284 | |
B | ARG286 | |
B | ARG290 | |
C | LYS152 | |
C | ARG154 | |
C | LYS189 | |
C | LYS196 | |
C | ARG248 | |
C | LYS272 | |
C | ALA281 | |
C | THR284 | |
C | ARG286 | |
C | ARG290 | |
D | LYS152 | |
D | ARG154 | |
D | LYS189 | |
D | LYS196 | |
D | ARG248 | |
D | LYS272 | |
D | ALA281 | |
D | THR284 | |
D | ARG286 | |
D | ARG290 | |
A | LYS152 | |
A | ARG154 | |
A | LYS196 | |
A | LYS189 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | MOD_RES: N6-acetyllysine; by autocatalysis => ECO:0000269|PubMed:12931194 |
Chain | Residue | Details |
A | LYS238 | |
B | LYS238 | |
C | LYS238 | |
D | LYS238 |