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5WGL

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with ricolinostat (ACY-1215)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 801
ChainResidue
AASP612
AHIS614
AASP705
AAH4804

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 802
ChainResidue
AASP610
AASP612
AHIS614
ASER633
ALEU634

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 803
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH990
AHOH1016

site_idAC4
Number of Residues21
Detailsbinding site for residue AH4 A 804
ChainResidue
AHIS462
ASER531
ALEU557
ATHR558
AHIS573
AHIS574
AGLY582
APHE583
AILE599
ALEU604
AASP612
AHIS614
AGLU696
AASP705
ALEU712
AARG736
ATYR745
AZN801
AHOH904
AHOH936
AHOH995

site_idAC5
Number of Residues6
Detailsbinding site for residue EDO A 805
ChainResidue
ATYR448
AASP449
APRO490
AALA491
AHOH949
AHOH1137

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 806
ChainResidue
AMET756
ASER759
ASER765
AHOH909
AHOH959

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO A 807
ChainResidue
ATHR773
ALYS776
AHOH939
AHOH1078
AHOH1145

site_idAC8
Number of Residues2
Detailsbinding site for residue EDO A 808
ChainResidue
AARG492
AHOH1058

site_idAC9
Number of Residues4
Detailsbinding site for residue EDO A 809
ChainResidue
ASER461
AHIS462
AGLN468
AHOH928

site_idAD1
Number of Residues2
Detailsbinding site for residue EDO A 810
ChainResidue
AHIS683
BHIS683

site_idAD2
Number of Residues5
Detailsbinding site for residue EDO A 811
ChainResidue
AGLY709
AASN746
ASER749
BARG476
BGLU479

site_idAD3
Number of Residues7
Detailsbinding site for residue PEG A 812
ChainResidue
AASN457
AASP460
AHIS463
AALA734
AARG736
AHOH910
AHOH1105

site_idAD4
Number of Residues8
Detailsbinding site for residue FLC A 813
ChainResidue
AHIS684
AHOH907
BPRO676
BMET679
BALA680
BHIS683
BHIS684
BLEU772

site_idAD5
Number of Residues4
Detailsbinding site for residue ZN B 801
ChainResidue
BASP612
BHIS614
BASP705
BAH4804

site_idAD6
Number of Residues5
Detailsbinding site for residue K B 802
ChainResidue
BASP610
BASP612
BHIS614
BSER633
BLEU634

site_idAD7
Number of Residues5
Detailsbinding site for residue K B 803
ChainResidue
BPHE623
BASP626
BVAL629
BTYR662
BHOH982

site_idAD8
Number of Residues11
Detailsbinding site for residue AH4 B 804
ChainResidue
BASP705
BPRO711
BTYR745
BZN801
BHOH950
BHOH1053
BSER531
BHIS573
BHIS574
BASP612
BHIS614

site_idAD9
Number of Residues4
Detailsbinding site for residue EDO B 805
ChainResidue
BGLU498
BTYR595
BHOH902
BHOH957

site_idAE1
Number of Residues4
Detailsbinding site for residue EDO B 806
ChainResidue
AHOH1088
BSER471
BARG472
BSER475

site_idAE2
Number of Residues4
Detailsbinding site for residue EDO B 807
ChainResidue
AARG476
BASN746
BTHR748
BSER749

site_idAE3
Number of Residues4
Detailsbinding site for residue EDO B 808
ChainResidue
BGLU576
BLYS577
BASP578
BTHR579

site_idAE4
Number of Residues5
Detailsbinding site for residue EDO B 809
ChainResidue
BGLY671
BTHR777
BSER778
BEDO810
BHOH1104

site_idAE5
Number of Residues4
Detailsbinding site for residue EDO B 810
ChainResidue
BTHR777
BSER778
BEDO809
BHOH991

site_idAE6
Number of Residues6
Detailsbinding site for residue EDO B 811
ChainResidue
BGLU496
BTYR539
BLEU543
BHOH985
BHOH1015
BHOH1089

site_idAE7
Number of Residues3
Detailsbinding site for residue EDO B 812
ChainResidue
BASN457
BASP460
BHOH908

site_idAE8
Number of Residues6
Detailsbinding site for residue EDO B 813
ChainResidue
BPRO676
BTHR773
BLYS776
BHOH973
BHOH996
BHOH1000

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PDB entries from 2024-06-12

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