Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5VYZ

Crystal structure of Lactococcus lactis pyruvate carboxylase in complex with cyclic-di-AMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004736molecular_functionpyruvate carboxylase activity
A0005524molecular_functionATP binding
A0006090biological_processpyruvate metabolic process
A0006094biological_processgluconeogenesis
A0046872molecular_functionmetal ion binding
B0003824molecular_functioncatalytic activity
B0004736molecular_functionpyruvate carboxylase activity
B0005524molecular_functionATP binding
B0006090biological_processpyruvate metabolic process
B0006094biological_processgluconeogenesis
B0046872molecular_functionmetal ion binding
C0003824molecular_functioncatalytic activity
C0004736molecular_functionpyruvate carboxylase activity
C0005524molecular_functionATP binding
C0006090biological_processpyruvate metabolic process
C0006094biological_processgluconeogenesis
C0046872molecular_functionmetal ion binding
D0003824molecular_functioncatalytic activity
D0004736molecular_functionpyruvate carboxylase activity
D0005524molecular_functionATP binding
D0006090biological_processpyruvate metabolic process
D0006094biological_processgluconeogenesis
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue MN A 1201
ChainResidue
AASP534
ALYS703
AHIS732
AHIS734

site_idAC2
Number of Residues23
Detailsbinding site for residue ADP A 1202
ChainResidue
AGLY162
AGLY163
AGLY164
AMET167
AGLU199
ALYS200
ATYR201
AILE202
AHIS207
AGLN231
AASN234
AGLU274
ALEU276
AGLU286
ATHR442
AMG1203
AHOH1304
AHOH1369
ALYS116
AILE131
AMET155
ALYS157
AGLY161

site_idAC3
Number of Residues4
Detailsbinding site for residue MG A 1203
ChainResidue
AGLU274
AGLU286
AADP1202
AHOH1304

site_idAC4
Number of Residues20
Detailsbinding site for residue 2BA A 1204
ChainResidue
APRO711
AGLN712
ATYR715
ASER745
AGLY746
AGLN749
AHOH1345
AHOH1372
AHOH1396
AHOH1424
AHOH1441
BPRO711
BGLN712
BTYR715
BSER745
BGLY746
BGLN749
BHOH1374
BHOH1427
CTYR715

site_idAC5
Number of Residues4
Detailsbinding site for residue MN B 1201
ChainResidue
BASP534
BLYS703
BHIS732
BHIS734

site_idAC6
Number of Residues21
Detailsbinding site for residue ADP B 1202
ChainResidue
BLYS116
BILE131
BMET155
BLYS157
BGLY161
BGLY162
BMET167
BGLU199
BLYS200
BILE202
BHIS207
BGLN231
BASN234
BGLU274
BLEU276
BILE285
BGLU286
BTHR442
BMG1203
BHOH1367
BHOH1422

site_idAC7
Number of Residues4
Detailsbinding site for residue MG B 1203
ChainResidue
BGLU274
BGLU286
BADP1202
BHOH1422

site_idAC8
Number of Residues4
Detailsbinding site for residue MN C 1201
ChainResidue
CASP534
CLYS703
CHIS732
CHIS734

site_idAC9
Number of Residues13
Detailsbinding site for residue ADP C 1202
ChainResidue
CILE131
CGLU199
CLYS200
CTYR201
CILE202
CHIS207
CGLN231
CASN234
CGLU274
CLEU276
CGLU286
CTHR442
CMG1203

site_idAD1
Number of Residues3
Detailsbinding site for residue MG C 1203
ChainResidue
CADP1202
CGLU274
CGLU286

site_idAD2
Number of Residues19
Detailsbinding site for residue 2BA D 1201
ChainResidue
AHOH1396
CPRO711
CGLN712
CTYR715
CSER745
CGLY746
CGLN749
CHOH1438
DPRO711
DGLN712
DTYR715
DSER745
DGLY746
DGLN749
DHOH1305
DHOH1416
DHOH1421
DHOH1455
DHOH1483

site_idAD3
Number of Residues4
Detailsbinding site for residue MN D 1202
ChainResidue
DASP534
DLYS703
DHIS732
DHIS734

site_idAD4
Number of Residues20
Detailsbinding site for residue ADP D 1203
ChainResidue
DLYS116
DILE131
DMET155
DLYS157
DGLY161
DGLY162
DGLY164
DMET167
DGLU199
DLYS200
DTYR201
DILE202
DHIS207
DGLN231
DASN234
DGLU274
DLEU276
DGLU286
DTHR442
DMG1204

site_idAD5
Number of Residues3
Detailsbinding site for residue MG D 1204
ChainResidue
DGLU274
DGLU286
DADP1203

Functional Information from PROSITE/UniProt
site_idPS00866
Number of Residues15
DetailsCPSASE_1 Carbamoyl-phosphate synthase subdomain signature 1. YPVMIKAAlggGGrG
ChainResidueDetails
ATYR152-GLY166

site_idPS00867
Number of Residues8
DetailsCPSASE_2 Carbamoyl-phosphate synthase subdomain signature 2. FIEVNPRV
ChainResidueDetails
APHE284-VAL291

238895

PDB entries from 2025-07-16

PDB statisticsPDBj update infoContact PDBjnumon