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5VT3

High resolution structure of thioredoxin-disulfide reductase from Vibrio vulnificus CMCP6 in complex with NADP and FAD

Functional Information from GO Data
ChainGOidnamespacecontents
A0004791molecular_functionthioredoxin-disulfide reductase (NADPH) activity
A0005737cellular_componentcytoplasm
A0016491molecular_functionoxidoreductase activity
A0019430biological_processremoval of superoxide radicals
B0004791molecular_functionthioredoxin-disulfide reductase (NADPH) activity
B0005737cellular_componentcytoplasm
B0016491molecular_functionoxidoreductase activity
B0019430biological_processremoval of superoxide radicals
Functional Information from PDB Data
site_idAC1
Number of Residues37
Detailsbinding site for residue NAP A 401
ChainResidue
AASN52
AARG178
AARG182
AGLU184
AILE243
AGLY244
AHIS245
ATYR292
AARG293
AGLN294
AFAD402
ALEU120
AHOH513
AHOH515
AHOH516
AHOH520
AHOH527
AHOH538
AHOH543
AHOH557
AHOH560
AHOH582
AGLY154
AHOH588
AHOH614
AHOH616
AHOH618
AHOH647
BGLN196
BASN197
BHOH625
AGLY155
AASN156
ATHR157
AGLU160
AHIS176
AARG177

site_idAC2
Number of Residues38
Detailsbinding site for residue FAD A 402
ChainResidue
AGLY13
ASER14
AGLY15
APRO16
AALA17
ATHR36
AGLY37
AMET38
AGLN39
AGLY42
AGLN43
ALEU44
ATHR47
AASN52
AHIS84
AILE85
ASER112
ATHR113
AGLY114
AGLU160
AHIS245
AGLY285
AASP286
AARG293
AGLN294
AALA295
ASER298
ANAP401
AK403
AHOH513
AHOH519
AHOH528
AHOH539
AHOH569
AHOH578
AHOH607
AHOH633
BTYR24

site_idAC3
Number of Residues4
Detailsbinding site for residue K A 403
ChainResidue
ATHR47
AGLU49
AGLU160
AFAD402

site_idAC4
Number of Residues3
Detailsbinding site for residue CAC A 404
ChainResidue
AASP257
ATHR276
ASER277

site_idAC5
Number of Residues4
Detailsbinding site for residue GOL A 405
ChainResidue
AGLY268
AHOH608
BSER267
BGOL401

site_idAC6
Number of Residues5
Detailsbinding site for residue GOL B 401
ChainResidue
ASER267
AGOL405
BSER267
BGLY268
BHOH566

site_idAC7
Number of Residues32
Detailsbinding site for residue NAP B 402
ChainResidue
BARG177
BARG178
BARG182
BILE243
BGLY244
BHIS245
BTYR292
BARG293
BGLN294
BFAD403
BHOH512
BHOH522
BHOH523
BHOH526
BHOH528
BHOH533
BHOH536
BHOH537
BHOH539
BHOH575
BHOH595
BHOH611
BHOH652
BHOH660
BASN52
BLEU120
BGLY154
BGLY155
BASN156
BTHR157
BGLU160
BHIS176

site_idAC8
Number of Residues37
Detailsbinding site for residue FAD B 403
ChainResidue
ATYR24
BGLY13
BSER14
BGLY15
BPRO16
BALA17
BTHR36
BGLY37
BMET38
BGLN39
BGLY42
BGLN43
BLEU44
BTHR47
BASN52
BHIS84
BILE85
BSER112
BTHR113
BGLY114
BALA115
BGLU160
BHIS245
BGLY285
BASP286
BARG293
BGLN294
BALA295
BSER298
BNAP402
BK404
BHOH516
BHOH517
BHOH559
BHOH569
BHOH585
BHOH598

site_idAC9
Number of Residues4
Detailsbinding site for residue K B 404
ChainResidue
BTHR47
BGLU49
BGLU160
BFAD403

site_idAD1
Number of Residues3
Detailsbinding site for residue CAC B 405
ChainResidue
BLEU264
BLYS266
BSER277

Functional Information from PROSITE/UniProt
site_idPS00573
Number of Residues21
DetailsPYRIDINE_REDOX_2 Pyridine nucleotide-disulphide oxidoreductases class-II active site. CatCDGff..YrnqkVaVVGGGN
ChainResidueDetails
ACYS136-ASN156

221051

PDB entries from 2024-06-12

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