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5VSM

Crystal structure of viperin with bound [4Fe-4S] cluster, 5'-deoxyadenosine, and L-methionine

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005789cellular_componentendoplasmic reticulum membrane
A0005811cellular_componentlipid droplet
A0051536molecular_functioniron-sulfur cluster binding
A0051607biological_processdefense response to virus
B0003824molecular_functioncatalytic activity
B0005789cellular_componentendoplasmic reticulum membrane
B0005811cellular_componentlipid droplet
B0051536molecular_functioniron-sulfur cluster binding
B0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue SF4 A 401
ChainResidue
ACYS84
ACYS88
ACYS91
AGLY126
AASN158
AARG194
A5AD402
AMET403

site_idAC2
Number of Residues13
Detailsbinding site for residue 5AD A 402
ChainResidue
APHE92
ASER180
AARG194
AASN222
AVAL224
AGLN250
ACYS251
ALEU252
AASN258
ASF4401
AMET403
AHOH580
APHE90

site_idAC3
Number of Residues11
Detailsbinding site for residue MET A 403
ChainResidue
ASER124
AGLY125
AGLY126
AGLU127
AVAL156
ASER157
AASN158
ASER180
AARG194
ASF4401
A5AD402

site_idAC4
Number of Residues9
Detailsbinding site for residue SF4 B 401
ChainResidue
BCYS84
BCYS88
BCYS91
BGLY126
BASN158
BARG194
BARG265
B5AD402
BMET403

site_idAC5
Number of Residues14
Detailsbinding site for residue 5AD B 402
ChainResidue
BPHE90
BPHE92
BSER180
BARG194
BASN222
BVAL224
BPHE249
BGLN250
BCYS251
BLEU252
BASN258
BSF4401
BMET403
BHOH634

site_idAC6
Number of Residues12
Detailsbinding site for residue MET B 403
ChainResidue
BPHE92
BSER124
BGLY125
BGLY126
BGLU127
BVAL156
BSER157
BASN158
BSER180
BARG194
BSF4401
B5AD402

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:28607080, ECO:0007744|PDB:5VSL, ECO:0007744|PDB:5VSM
ChainResidueDetails
ACYS84
ACYS88
ACYS91
BCYS84
BCYS88
BCYS91

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q8WXG1
ChainResidueDetails
ALYS198
BLYS198

site_idSWS_FT_FI3
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:Q8WXG1
ChainResidueDetails
ALYS207
BLYS207

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 965
ChainResidueDetails
ACYS84metal ligand
ACYS88metal ligand
ACYS91metal ligand

site_idMCSA2
Number of Residues3
DetailsM-CSA 965
ChainResidueDetails
BCYS84metal ligand
BCYS88metal ligand
BCYS91metal ligand

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PDB entries from 2024-11-20

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