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5VJN

Crystal Structure of Adenine Phosphoribosyltransferase from Saccharomyces cerevisiae Complexed with D-2,5-Dideoxy-2,5-Imino-Altritol 1,6-Bisphosphate (D-DIAB) and Adenine

Functional Information from GO Data
ChainGOidnamespacecontents
A0002055molecular_functionadenine binding
A0003999molecular_functionadenine phosphoribosyltransferase activity
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0006166biological_processpurine ribonucleoside salvage
A0006168biological_processadenine salvage
A0016208molecular_functionAMP binding
A0016757molecular_functionglycosyltransferase activity
A0044209biological_processAMP salvage
A0046872molecular_functionmetal ion binding
B0002055molecular_functionadenine binding
B0003999molecular_functionadenine phosphoribosyltransferase activity
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0006166biological_processpurine ribonucleoside salvage
B0006168biological_processadenine salvage
B0016208molecular_functionAMP binding
B0016757molecular_functionglycosyltransferase activity
B0044209biological_processAMP salvage
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues17
Detailsbinding site for residue IR8 A 201
ChainResidue
AARG69
AADE205
AHOH303
AHOH316
AHOH331
AHOH344
AHOH351
AHOH371
AHOH394
ALYS90
AASP129
AASP130
AILE131
AALA133
ATHR134
AGLY135
ASER137

site_idAC2
Number of Residues9
Detailsbinding site for residue EDO A 202
ChainResidue
AGLN115
AASN117
AHOH301
AHOH327
BLEU31
BPRO32
BARG35
BHOH304
BHOH329

site_idAC3
Number of Residues6
Detailsbinding site for residue EDO A 203
ChainResidue
ALEU51
AGLU52
APHE55
AVAL58
ALEU81
AEDO204

site_idAC4
Number of Residues6
Detailsbinding site for residue EDO A 204
ChainResidue
ALYS59
AILE60
ALEU81
AVAL83
AEDO203
AHOH413

site_idAC5
Number of Residues10
Detailsbinding site for residue ADE A 205
ChainResidue
ALEU26
APHE27
AGLU28
AARG69
AILE131
AALA133
ALEU161
AIR8201
AHOH378
AHOH400

site_idAC6
Number of Residues18
Detailsbinding site for residue IR8 B 201
ChainResidue
ALYS93
ATYR107
AHOH335
BARG69
BASP129
BASP130
BILE131
BALA133
BTHR134
BGLY135
BSER137
BHOH305
BHOH317
BHOH320
BHOH327
BHOH349
BHOH372
BHOH411

site_idAC7
Number of Residues7
Detailsbinding site for residue EDO B 202
ChainResidue
BGLU52
BPHE55
BVAL58
BILE60
BEDO203
BHOH319
BHOH418

site_idAC8
Number of Residues5
Detailsbinding site for residue EDO B 203
ChainResidue
BLYS59
BILE60
BLEU81
BVAL83
BEDO202

Functional Information from PROSITE/UniProt
site_idPS00103
Number of Residues13
DetailsPUR_PYR_PR_TRANSFER Purine/pyrimidine phosphoribosyl transferases signature. VIIVDDIIATGgS
ChainResidueDetails
AVAL125-SER137

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305
ChainResidueDetails
AALA133
BALA133

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18407956
ChainResidueDetails
ASER68
BSER68

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PDB entries from 2024-07-10

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