5V94
Pekin duck egg lysozyme isoform III (DEL-III), cubic form
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003796 | molecular_function | lysozyme activity |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0005576 | cellular_component | extracellular region |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| A | 0016998 | biological_process | cell wall macromolecule catabolic process |
| A | 0031640 | biological_process | killing of cells of another organism |
| A | 0042742 | biological_process | defense response to bacterium |
| A | 0050829 | biological_process | defense response to Gram-negative bacterium |
| A | 0050830 | biological_process | defense response to Gram-positive bacterium |
| B | 0003796 | molecular_function | lysozyme activity |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0005576 | cellular_component | extracellular region |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| B | 0016998 | biological_process | cell wall macromolecule catabolic process |
| B | 0031640 | biological_process | killing of cells of another organism |
| B | 0042742 | biological_process | defense response to bacterium |
| B | 0050829 | biological_process | defense response to Gram-negative bacterium |
| B | 0050830 | biological_process | defense response to Gram-positive bacterium |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 10 |
| Details | binding site for residue PO4 A 201 |
| Chain | Residue |
| A | TYR34 |
| A | HOH304 |
| A | TYR34 |
| A | TYR34 |
| A | ARG114 |
| A | ARG114 |
| A | ARG114 |
| A | HOH302 |
| A | HOH302 |
| A | HOH302 |
| site_id | AC2 |
| Number of Residues | 12 |
| Details | binding site for residue PO4 A 202 |
| Chain | Residue |
| A | SER4 |
| A | CYS6 |
| A | GLU7 |
| A | ARG112 |
| A | ARG116 |
| A | HOH313 |
| A | HOH314 |
| A | HOH320 |
| A | HOH333 |
| A | HOH348 |
| A | HOH352 |
| B | SER4 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue PO4 A 203 |
| Chain | Residue |
| A | ARG85 |
| A | SER86 |
| A | HOH383 |
| B | ARG79 |
| site_id | AC4 |
| Number of Residues | 12 |
| Details | binding site for residue PO4 A 204 |
| Chain | Residue |
| A | ARG97 |
| A | ARG97 |
| A | ARG97 |
| A | ARG100 |
| A | ARG100 |
| A | ARG100 |
| A | PO4205 |
| A | PO4205 |
| A | HOH305 |
| A | HOH305 |
| A | HOH305 |
| A | HOH308 |
| site_id | AC5 |
| Number of Residues | 8 |
| Details | binding site for residue PO4 A 205 |
| Chain | Residue |
| A | ARG93 |
| A | ARG97 |
| A | ARG100 |
| A | PO4204 |
| A | PO4204 |
| A | HOH307 |
| A | HOH309 |
| A | HOH319 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | binding site for residue MRD A 206 |
| Chain | Residue |
| A | ASN113 |
| A | ARG114 |
| A | THR118 |
| A | LYS122 |
| A | TRP123 |
| A | HOH328 |
| A | HOH345 |
| site_id | AC7 |
| Number of Residues | 9 |
| Details | binding site for residue TRS A 207 |
| Chain | Residue |
| A | GLU35 |
| A | ASP52 |
| A | GLN57 |
| A | ALA107 |
| A | TRP108 |
| A | VAL109 |
| A | HOH321 |
| A | HOH381 |
| B | ARG128 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | binding site for residue PO4 B 201 |
| Chain | Residue |
| A | ARG79 |
| B | ARG85 |
| B | SER86 |
| B | HOH330 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | binding site for residue PO4 B 202 |
| Chain | Residue |
| B | ARG97 |
| B | ARG97 |
| B | ARG97 |
| B | ARG100 |
| B | ARG100 |
| B | ARG100 |
Functional Information from PROSITE/UniProt
| site_id | PS00128 |
| Number of Residues | 19 |
| Details | GLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CgirCsvLlrsDIteavrC |
| Chain | Residue | Details |
| A | CYS76-CYS94 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 256 |
| Details | Domain: {"description":"C-type lysozyme","evidences":[{"source":"PROSITE-ProRule","id":"PRU00680","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | Active site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00680","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
