Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5V1M

Structure of human Usb1 with uridine 5'-monophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004518molecular_functionnuclease activity
A0034477biological_processU6 snRNA 3'-end processing
Functional Information from PDB Data
site_idAC1
Number of Residues1
Detailsbinding site for residue CL A 301
ChainResidue
AARG112

site_idAC2
Number of Residues1
Detailsbinding site for residue GOL A 302
ChainResidue
ALYS142

site_idAC3
Number of Residues4
Detailsbinding site for residue GOL A 303
ChainResidue
AHIS84
ATYR86
AVAL118
ALYS254

site_idAC4
Number of Residues4
Detailsbinding site for residue GOL A 304
ChainResidue
AHOH443
AALA140
AARG144
AGLU195

site_idAC5
Number of Residues4
Detailsbinding site for residue GOL A 305
ChainResidue
AGLN139
ALYS142
AALA143
AHOH438

site_idAC6
Number of Residues4
Detailsbinding site for residue GOL A 306
ChainResidue
AASN156
ATHR176
AHOH402
AHOH426

site_idAC7
Number of Residues4
Detailsbinding site for residue GOL A 307
ChainResidue
AGLU249
AGLN250
AHOH405
AHOH431

site_idAC8
Number of Residues14
Detailsbinding site for residue U5P A 308
ChainResidue
AHIS120
ASER122
AASN163
AGLN164
ATYR202
APRO205
ASER206
AHIS208
ASER210
AHOH401
AHOH410
AHOH413
AHOH436
AHOH458

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_03040, ECO:0000269|PubMed:23190533, ECO:0000269|PubMed:30215753
ChainResidueDetails
AHIS120

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_03040, ECO:0000269|PubMed:23190533, ECO:0000269|PubMed:30215753
ChainResidueDetails
AHIS208

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:30215753, ECO:0007744|PDB:6D31
ChainResidueDetails
AHIS120
AASP204

site_idSWS_FT_FI4
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:28887445, ECO:0007744|PDB:5V1M
ChainResidueDetails
AGLN164
ATYR202
ASER206

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon