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5V0W

Crystal structure of glycylpeptide N-tetradecanoyltransferase from Plasmodium vivax in complex with inhibitor IMP-0001088

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0005737cellular_componentcytoplasm
A0006499biological_processN-terminal protein myristoylation
A0016746molecular_functionacyltransferase activity
A0046872molecular_functionmetal ion binding
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0005737cellular_componentcytoplasm
B0006499biological_processN-terminal protein myristoylation
B0016746molecular_functionacyltransferase activity
B0046872molecular_functionmetal ion binding
C0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
C0005737cellular_componentcytoplasm
C0006499biological_processN-terminal protein myristoylation
C0016746molecular_functionacyltransferase activity
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues38
Detailsbinding site for residue MYA A 501
ChainResidue
ATYR28
ACYS164
AVAL165
AARG170
ASER171
ALYS172
AARG173
ALEU174
AALA175
APRO176
ATHR183
ALYS29
AILE186
ATRP192
AGLN193
AALA194
ATYR196
ATHR197
ALEU202
ATYR393
AHOH658
AHOH667
APHE30
AHOH671
AHOH736
AHOH759
AHOH787
AHOH798
AHOH814
AHOH852
AHOH891
AHOH933
ATRP31
ATYR95
AVAL96
AASN161
APHE162
ALEU163

site_idAC2
Number of Residues17
Detailsbinding site for residue KFK A 502
ChainResidue
AVAL96
AASP98
APHE103
APHE105
ATYR107
AASN161
ATHR197
AGLY199
ATYR211
AHIS213
ASER319
ATYR334
AASN365
AALA366
ALEU367
ALEU409
ALEU410

site_idAC3
Number of Residues4
Detailsbinding site for residue SO4 A 503
ChainResidue
APRO69
AGLY70
AHOH760
CGLY25

site_idAC4
Number of Residues7
Detailsbinding site for residue SO4 A 504
ChainResidue
AASP54
AASN55
AHOH623
AHOH715
AHOH856
AHOH910
AHOH981

site_idAC5
Number of Residues7
Detailsbinding site for residue SO4 A 505
ChainResidue
ALYS307
AHOH629
AHOH666
AHOH880
CPHE400
CALA401
CHIS404

site_idAC6
Number of Residues9
Detailsbinding site for residue SO4 A 506
ChainResidue
AARG243
AVAL244
AGLU245
AGLN350
AHOH670
AHOH717
AHOH815
AHOH884
AHOH908

site_idAC7
Number of Residues5
Detailsbinding site for residue CL A 507
ChainResidue
ALYS180
ATHR247
ALEU248
AARG358
AHOH650

site_idAC8
Number of Residues37
Detailsbinding site for residue MYA B 501
ChainResidue
BLYS172
BARG173
BLEU174
BALA175
BPRO176
BTHR183
BILE186
BTRP192
BGLN193
BALA194
BTYR196
BTHR197
BLEU202
BTYR393
BHOH620
BHOH631
BHOH634
BHOH747
BHOH778
BHOH820
BHOH830
BHOH835
BHOH889
BHOH910
BHOH959
BTYR28
BLYS29
BPHE30
BTRP31
BTYR95
BVAL96
BPHE162
BLEU163
BCYS164
BVAL165
BARG170
BSER171

site_idAC9
Number of Residues16
Detailsbinding site for residue KFK B 502
ChainResidue
BVAL96
BASP98
BPHE103
BPHE105
BTYR107
BASN161
BTHR197
BTYR211
BHIS213
BSER319
BTYR334
BASN365
BALA366
BLEU367
BLEU409
BLEU410

site_idAD1
Number of Residues4
Detailsbinding site for residue SO4 B 503
ChainResidue
AARG210
ALYS373
BARG210
BLYS373

site_idAD2
Number of Residues5
Detailsbinding site for residue SO4 B 504
ChainResidue
BSER328
BHOH705
BHOH871
BHOH921
CARG104

site_idAD3
Number of Residues10
Detailsbinding site for residue SO4 B 505
ChainResidue
BLYS29
BARG243
BVAL244
BGLU245
BGLN350
BHOH689
BHOH757
BHOH772
BHOH821
BHOH903

site_idAD4
Number of Residues5
Detailsbinding site for residue SO4 B 506
ChainResidue
BSER53
BASP54
BASN55
BHOH635
BHOH765

site_idAD5
Number of Residues4
Detailsbinding site for residue CL B 507
ChainResidue
BLYS180
BTHR247
BLEU248
BARG358

site_idAD6
Number of Residues1
Detailsbinding site for residue CL B 508
ChainResidue
BLYS283

site_idAD7
Number of Residues37
Detailsbinding site for residue MYA C 501
ChainResidue
CTYR28
CLYS29
CPHE30
CTRP31
CTYR95
CVAL96
CPHE162
CLEU163
CCYS164
CVAL165
CARG170
CSER171
CLYS172
CARG173
CLEU174
CALA175
CPRO176
CTHR183
CILE186
CASN187
CTRP192
CALA194
CTYR196
CTHR197
CLEU202
CTYR393
CHOH617
CHOH680
CHOH700
CHOH717
CHOH719
CHOH721
CHOH816
CHOH827
CHOH830
CHOH837
CHOH953

site_idAD8
Number of Residues16
Detailsbinding site for residue KFK C 502
ChainResidue
CVAL96
CPHE103
CPHE105
CTYR107
CASN161
CTHR197
CGLY199
CTYR211
CHIS213
CSER319
CTYR334
CASN365
CALA366
CLEU367
CLEU409
CLEU410

site_idAD9
Number of Residues9
Detailsbinding site for residue SO4 C 503
ChainResidue
CLYS130
CASN135
CTYR327
CSER328
CTHR329
CHOH626
CHOH678
CHOH734
CHOH922

site_idAE1
Number of Residues4
Detailsbinding site for residue SO4 C 504
ChainResidue
CTYR32
CLYS346
CGLN347
CHOH671

site_idAE2
Number of Residues1
Detailsbinding site for residue SO4 C 505
ChainResidue
CLYS309

site_idAE3
Number of Residues4
Detailsbinding site for residue CL C 506
ChainResidue
CLYS180
CTHR247
CLEU248
CARG358

site_idAE4
Number of Residues1
Detailsbinding site for residue CL C 507
ChainResidue
CLYS283

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EVNFLCvHK
ChainResidueDetails
AGLU159-LYS167

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGeGDG
ChainResidueDetails
ALYS380-GLY386

221051

PDB entries from 2024-06-12

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