Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5UWN

Matrix metalloproteinase-13 complexed with selective inhibitor compound 10d

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004222	molecular_function	metalloendopeptidase activity
A	0006508	biological_process	proteolysis
A	0008237	molecular_function	metallopeptidase activity
A	0008270	molecular_function	zinc ion binding
A	0031012	cellular_component	extracellular matrix
B	0004222	molecular_function	metalloendopeptidase activity
B	0006508	biological_process	proteolysis
B	0008237	molecular_function	metallopeptidase activity
B	0008270	molecular_function	zinc ion binding
B	0031012	cellular_component	extracellular matrix
C	0004222	molecular_function	metalloendopeptidase activity
C	0006508	biological_process	proteolysis
C	0008237	molecular_function	metallopeptidase activity
C	0008270	molecular_function	zinc ion binding
C	0031012	cellular_component	extracellular matrix
D	0004222	molecular_function	metalloendopeptidase activity
D	0006508	biological_process	proteolysis
D	0008237	molecular_function	metallopeptidase activity
D	0008270	molecular_function	zinc ion binding
D	0031012	cellular_component	extracellular matrix
E	0004222	molecular_function	metalloendopeptidase activity
E	0006508	biological_process	proteolysis
E	0008237	molecular_function	metallopeptidase activity
E	0008270	molecular_function	zinc ion binding
E	0031012	cellular_component	extracellular matrix

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue ZN A 301

Chain	Residue
A	HIS222
A	GLU223
A	HIS226
A	HIS232

site_id	AC2
Number of Residues	4
Details	binding site for residue ZN A 302

Chain	Residue
A	HIS172
A	ASP174
A	HIS187
A	HIS200

site_id	AC3
Number of Residues	6
Details	binding site for residue CA A 303

Chain	Residue
A	GLY180
A	SER182
A	LEU184
A	ASP202
A	GLU205
A	ASP179

site_id	AC4
Number of Residues	4
Details	binding site for residue CA A 304

Chain	Residue
A	ASP162
A	ASN194
A	GLY196
A	ASP198

site_id	AC5
Number of Residues	14
Details	binding site for residue 8O7 A 305

Chain	Residue
A	LEU184
A	LEU185
A	ALA186
A	LEU218
A	HIS222
A	GLU223
A	LEU239
A	PHE241
A	PRO242
A	ILE243
A	TYR244
A	THR245
A	THR247
A	LYS249

site_id	AC6
Number of Residues	3
Details	binding site for residue SO4 A 306

Chain	Residue
A	LYS115
A	MET116
A	ASN117

site_id	AC7
Number of Residues	3
Details	binding site for residue SO4 A 307

Chain	Residue
A	TYR120
A	LYS139
A	ARG155

site_id	AC8
Number of Residues	3
Details	binding site for residue ZN B 301

Chain	Residue
B	HIS222
B	HIS226
B	HIS232

site_id	AC9
Number of Residues	4
Details	binding site for residue ZN B 302

Chain	Residue
B	HIS172
B	ASP174
B	HIS187
B	HIS200

site_id	AD1
Number of Residues	6
Details	binding site for residue CA B 303

Chain	Residue
B	ASP179
B	GLY180
B	SER182
B	LEU184
B	ASP202
B	GLU205

site_id	AD2
Number of Residues	5
Details	binding site for residue CA B 304

Chain	Residue
B	ALA161
B	ASP162
B	ASN194
B	GLY196
B	ASP198

site_id	AD3
Number of Residues	16
Details	binding site for residue 8O7 B 305

Chain	Residue
B	LEU184
B	LEU185
B	ALA186
B	LEU218
B	HIS222
B	GLU223
B	GLY237
B	ALA238
B	LEU239
B	PHE241
B	PRO242
B	ILE243
B	TYR244
B	THR245
B	THR247
B	PHE252

site_id	AD4
Number of Residues	3
Details	binding site for residue SO4 B 306

Chain	Residue
B	LYS115
B	MET116
B	ASN117

site_id	AD5
Number of Residues	3
Details	binding site for residue SO4 B 307

Chain	Residue
B	TYR120
B	LYS139
B	ARG155

site_id	AD6
Number of Residues	3
Details	binding site for residue ZN C 301

Chain	Residue
C	HIS222
C	HIS226
C	HIS232

site_id	AD7
Number of Residues	4
Details	binding site for residue ZN C 302

Chain	Residue
C	HIS172
C	ASP174
C	HIS187
C	HIS200

site_id	AD8
Number of Residues	6
Details	binding site for residue CA C 303

Chain	Residue
C	ASP179
C	GLY180
C	SER182
C	LEU184
C	ASP202
C	GLU205

site_id	AD9
Number of Residues	4
Details	binding site for residue CA C 304

Chain	Residue
C	ASP162
C	ASN194
C	GLY196
C	ASP198

site_id	AE1
Number of Residues	16
Details	binding site for residue 8O7 C 305

Chain	Residue
C	LEU218
C	VAL219
C	ALA238
C	LEU239
C	PHE241
C	PRO242
C	ILE243
C	TYR244
C	THR245
C	TYR246
C	PHE252
C	PRO255
C	GLY183
C	LEU184
C	LEU185
C	ALA186

site_id	AE2
Number of Residues	4
Details	binding site for residue SO4 C 306

Chain	Residue
C	THR130
C	HIS131
E	THR130
E	HIS131

site_id	AE3
Number of Residues	3
Details	binding site for residue SO4 C 307

Chain	Residue
C	GLU135
C	LYS139
C	ARG155

site_id	AE4
Number of Residues	4
Details	binding site for residue ZN D 301

Chain	Residue
D	HIS222
D	GLU223
D	HIS226
D	HIS232

site_id	AE5
Number of Residues	4
Details	binding site for residue ZN D 302

Chain	Residue
D	HIS172
D	ASP174
D	HIS187
D	HIS200

site_id	AE6
Number of Residues	6
Details	binding site for residue CA D 303

Chain	Residue
D	ASP179
D	GLY180
D	SER182
D	LEU184
D	ASP202
D	GLU205

site_id	AE7
Number of Residues	4
Details	binding site for residue CA D 304

Chain	Residue
D	ASP162
D	ASN194
D	GLY196
D	ASP198

site_id	AE8
Number of Residues	16
Details	binding site for residue 8O7 D 305

Chain	Residue
D	LEU184
D	LEU185
D	ALA186
D	LEU218
D	VAL219
D	HIS222
D	GLU223
D	GLY237
D	LEU239
D	PHE241
D	PRO242
D	ILE243
D	THR245
D	THR247
D	PHE252
D	PRO255

site_id	AE9
Number of Residues	4
Details	binding site for residue SO4 D 306

Chain	Residue
B	LYS234
D	LYS115
D	MET116
D	ASN117

site_id	AF1
Number of Residues	4
Details	binding site for residue SO4 D 307

Chain	Residue
A	THR130
A	HIS131
D	THR130
D	HIS131

site_id	AF2
Number of Residues	2
Details	binding site for residue SO4 D 308

Chain	Residue
D	THR130
D	SER132

site_id	AF3
Number of Residues	3
Details	binding site for residue SO4 D 309

Chain	Residue
D	TYR120
D	LYS139
D	ARG155

site_id	AF4
Number of Residues	3
Details	binding site for residue SO4 D 310

Chain	Residue
D	THR208
D	SER210
D	LYS212

site_id	AF5
Number of Residues	4
Details	binding site for residue ZN E 301

Chain	Residue
E	HIS222
E	GLU223
E	HIS226
E	HIS232

site_id	AF6
Number of Residues	4
Details	binding site for residue ZN E 302

Chain	Residue
E	HIS172
E	ASP174
E	HIS187
E	HIS200

site_id	AF7
Number of Residues	6
Details	binding site for residue CA E 303

Chain	Residue
E	ASP179
E	GLY180
E	SER182
E	LEU184
E	ASP202
E	GLU205

site_id	AF8
Number of Residues	4
Details	binding site for residue CA E 304

Chain	Residue
E	ASP162
E	ASN194
E	GLY196
E	ASP198

site_id	AF9
Number of Residues	19
Details	binding site for residue 8O7 E 305

Chain	Residue
B	SER264
B	PRO268
E	MET103
E	TYR104
E	LEU184
E	LEU185
E	ALA186
E	LEU218
E	HIS222
E	GLU223
E	GLY237
E	ALA238
E	PHE241
E	PRO242
E	ILE243
E	TYR244
E	THR245
E	THR247
E	PRO255

site_id	AG1
Number of Residues	3
Details	binding site for residue SO4 E 306

Chain	Residue
E	LYS115
E	MET116
E	ASN117

site_id	AG2
Number of Residues	3
Details	binding site for residue SO4 E 307

Chain	Residue
E	TYR120
E	LYS139
E	ARG155

site_id	AG3
Number of Residues	3
Details	binding site for residue SO4 E 308

Chain	Residue
E	THR208
E	SER209
E	SER210

Functional Information from PROSITE/UniProt

site_id	PS00142
Number of Residues	10
Details	ZINC_PROTEASE Neutral zinc metallopeptidases, zinc-binding region signature. VAAHEFGHSL

Chain	Residue	Details
A	VAL219-LEU228

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	350
Details	Region: {"description":"Interaction with TIMP2"}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	5
Details	Active site: {"evidences":[{"source":"PubMed","id":"23913860","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	60
Details	Binding site: {"evidences":[{"source":"PubMed","id":"10926524","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10986126","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15734645","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15780611","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17196980","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17623656","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19422229","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20005097","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20726512","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22689580","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23810497","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23913860","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"8969305","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	40
Details	Binding site: {"evidences":[{"source":"PubMed","id":"10926524","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10986126","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15734645","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15780611","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17196980","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17623656","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19422229","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20005097","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20726512","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22689580","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23810497","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23913860","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	5
Details	Glycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"source":"PubMed","id":"8576151","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	5
Details	Glycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)