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5URB

Crystal Structure of Methionyl-tRNA synthetase (MetRS) from Acinetobacter baumannii with bound L-Methionine

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004825molecular_functionmethionine-tRNA ligase activity
A0005524molecular_functionATP binding
A0006418biological_processtRNA aminoacylation for protein translation
A0006431biological_processmethionyl-tRNA aminoacylation
B0000166molecular_functionnucleotide binding
B0004812molecular_functionaminoacyl-tRNA ligase activity
B0004825molecular_functionmethionine-tRNA ligase activity
B0005524molecular_functionATP binding
B0006418biological_processtRNA aminoacylation for protein translation
B0006431biological_processmethionyl-tRNA aminoacylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue NA A 601
ChainResidue
AASN321
ASER362
ALYS364
AHOH866
AHOH919

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 602
ChainResidue
ACYS142
ACYS145
ACYS155
ACYS158

site_idAC3
Number of Residues9
Detailsbinding site for residue MET A 603
ChainResidue
ALEU10
ATYR12
AASP49
ATRP251
APRO255
ATYR258
AILE295
AHOH747
AHOH881

site_idAC4
Number of Residues2
Detailsbinding site for residue EDO A 604
ChainResidue
AILE116
AHOH1054

site_idAC5
Number of Residues7
Detailsbinding site for residue EDO A 605
ChainResidue
AGLU512
AGLN516
AHOH703
AHOH727
BASN193
BTYR197
BGLU308

site_idAC6
Number of Residues7
Detailsbinding site for residue EDO A 606
ChainResidue
AASN193
ATYR197
AGLU308
AHOH706
AHOH737
BGLU512
BGLN516

site_idAC7
Number of Residues4
Detailsbinding site for residue NO3 A 607
ChainResidue
AMET56
ALEU57
AGLU60
AMET131

site_idAC8
Number of Residues8
Detailsbinding site for residue NO3 A 608
ChainResidue
ASER134
AASP135
AARG136
APHE137
AARG231
ATYR249
AHOH854
AHOH1025

site_idAC9
Number of Residues7
Detailsbinding site for residue NO3 A 609
ChainResidue
AARG171
ASER172
ANO3611
AHOH943
BTRP459
BHOH703
BHOH746

site_idAD1
Number of Residues4
Detailsbinding site for residue NO3 A 610
ChainResidue
APHE298
APHE302
AHOH750
AHOH901

site_idAD2
Number of Residues8
Detailsbinding site for residue NO3 A 611
ChainResidue
ALYS139
AASP149
AARG171
ANO3609
AHOH725
BARG393
BHOH746
BHOH888

site_idAD3
Number of Residues1
Detailsbinding site for residue NO3 A 612
ChainResidue
AASN62

site_idAD4
Number of Residues5
Detailsbinding site for residue NA B 601
ChainResidue
BASN321
BSER362
BLYS364
BHOH903
BHOH1012

site_idAD5
Number of Residues4
Detailsbinding site for residue ZN B 602
ChainResidue
BCYS142
BCYS145
BCYS155
BCYS158

site_idAD6
Number of Residues11
Detailsbinding site for residue MET B 603
ChainResidue
BLEU10
BTYR12
BASP49
BTRP251
BALA254
BPRO255
BTYR258
BILE295
BHOH803
BHOH854
BHOH879

site_idAD7
Number of Residues5
Detailsbinding site for residue NO3 B 604
ChainResidue
AARG111
AGLU112
AGLY114
BSER413
BILE517

site_idAD8
Number of Residues6
Detailsbinding site for residue NO3 B 605
ChainResidue
BASN14
BARG58
BASN62
BGLN69
BVAL73
BHOH945

site_idAD9
Number of Residues8
Detailsbinding site for residue NO3 B 606
ChainResidue
AHOH784
BLYS139
BASP149
BARG171
BNO3607
BHOH851
AARG393
AHOH715

site_idAE1
Number of Residues8
Detailsbinding site for residue NO3 B 607
ChainResidue
ALYS396
ATRP459
AHOH715
BARG171
BSER172
BTHR173
BNO3606
BHOH748

site_idAE2
Number of Residues3
Detailsbinding site for residue NO3 B 608
ChainResidue
BPHE302
BNO3609
BHOH967

site_idAE3
Number of Residues2
Detailsbinding site for residue NO3 B 609
ChainResidue
BTRP219
BNO3608

site_idAE4
Number of Residues3
Detailsbinding site for residue NO3 B 610
ChainResidue
BHIS347
BHOH789
BHOH1020

Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues12
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. PyaNGpIHMGHL
ChainResidueDetails
APRO11-LEU22

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PDB entries from 2025-08-27

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