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5URB

Crystal Structure of Methionyl-tRNA synthetase (MetRS) from Acinetobacter baumannii with bound L-Methionine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2016-11-10
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.97872
Spacegroup nameP 1 21 1
Unit cell lengths69.910, 108.410, 78.570
Unit cell angles90.00, 90.69, 90.00
Refinement procedure
Resolution37.726 - 1.900
R-factor0.157
Rwork0.156
R-free0.19440
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1rqg
RMSD bond length0.006
RMSD bond angle0.750
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMR-Rosetta
Refinement softwarePHENIX ((dev_2666))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]37.72637.7261.950
High resolution limit [Å]1.9008.5001.900
Rmerge0.0650.0300.450
Rmeas0.0750.0360.524
Total number of observations347616
Number of reflections9149310576712
<I/σ(I)>13.9331.273.11
Completeness [%]99.397.598.9
Redundancy3.7993.5783.804
CC(1/2)0.9980.9980.850
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP290AcbaB.10201.a.A2.PW37928 at 40 mg/ml incubated with 5 mM L-Met then mixed 1:1 with an equal volume JCSG+(c3): 20% (w/v) PEG-3350, 200 mM ammonium nitrate, cryoprotected with 20% ethylene glycol

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PDB entries from 2024-07-17

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