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5ULP

Structure of the NS5 methyltransferase from Zika bound to MS2042

Functional Information from GO Data
ChainGOidnamespacecontents
A0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
A0004483molecular_functionmethyltransferase cap1 activity
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
B0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
B0004483molecular_functionmethyltransferase cap1 activity
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues27
Detailsbinding site for residue KB1 A 301
ChainResidue
ASER56
AHIS110
AVAL130
AASP131
AVAL132
APHE133
AASP146
AGLY148
ALYS182
ACL304
AIPA308
AGLY58
AHOH428
AHOH460
AHOH475
AHOH545
AHOH558
AHOH561
AHOH567
AHOH591
AGLY81
ACYS82
AGLY83
AGLY86
ATRP87
ATHR104
ALYS105

site_idAC2
Number of Residues5
Detailsbinding site for residue CL A 302
ChainResidue
AGLY148
AGLU149
AHOH513
AHOH575
AHOH612

site_idAC3
Number of Residues2
Detailsbinding site for residue CL A 303
ChainResidue
AALA225
ALYS226

site_idAC4
Number of Residues4
Detailsbinding site for residue CL A 304
ChainResidue
AGLY148
AKB1301
AHOH612
AHOH654

site_idAC5
Number of Residues6
Detailsbinding site for residue URE A 305
ChainResidue
AARG37
AARG41
AARG57
AARG84
AHOH402
AHOH517

site_idAC6
Number of Residues6
Detailsbinding site for residue URE A 306
ChainResidue
ALEU71
AGLN72
AALA178
ASER223
AGLY224
AHOH452

site_idAC7
Number of Residues5
Detailsbinding site for residue URE A 307
ChainResidue
ALEU162
ASER166
AARG197
AHOH417
AHOH478

site_idAC8
Number of Residues6
Detailsbinding site for residue IPA A 308
ChainResidue
ASER56
AGLY58
ALYS61
AKB1301
AHOH465
AHOH542

site_idAC9
Number of Residues5
Detailsbinding site for residue NA A 309
ChainResidue
AGLY107
AHIS110
AGLU112
AHOH599
AHOH610

site_idAD1
Number of Residues25
Detailsbinding site for residue KB1 B 301
ChainResidue
BSER56
BGLY58
BGLY81
BCYS82
BGLY83
BGLY86
BTRP87
BTHR104
BLYS105
BVAL130
BASP131
BVAL132
BPHE133
BASP146
BGLY148
BLYS182
BNA308
BHOH446
BHOH450
BHOH471
BHOH478
BHOH561
BHOH566
BHOH584
BHOH587

site_idAD2
Number of Residues4
Detailsbinding site for residue CL B 302
ChainResidue
BGLY148
BGLU149
BHOH601
BHOH628

site_idAD3
Number of Residues3
Detailsbinding site for residue URE B 303
ChainResidue
BMET114
BLEU115
BHOH462

site_idAD4
Number of Residues3
Detailsbinding site for residue URE B 304
ChainResidue
BHOH401
BHOH531
BSER166

site_idAD5
Number of Residues5
Detailsbinding site for residue URE B 305
ChainResidue
BLEU71
BGLN72
BALA178
BSER223
BGLY224

site_idAD6
Number of Residues6
Detailsbinding site for residue URE B 306
ChainResidue
BARG37
BARG41
BVAL55
BSER56
BARG84
BHOH553

site_idAD7
Number of Residues4
Detailsbinding site for residue URE B 307
ChainResidue
BGLU67
BGLU254
BGLU255
BHOH432

site_idAD8
Number of Residues4
Detailsbinding site for residue NA B 308
ChainResidue
BGLY148
BKB1301
BHOH628
BHOH691

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsACT_SITE: For 2'-O-MTase activity => ECO:0000250|UniProtKB:Q6YMS4
ChainResidueDetails
ALYS61
AASP146
ALYS182
AGLU218
BLYS61
BASP146
BLYS182
BGLU218

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:27866982
ChainResidueDetails
ALYS13
AGLU149
AARG213
BLYS13
BGLU149
BARG213

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00924, ECO:0000269|PubMed:27866982
ChainResidueDetails
ASER56
ATHR104
BSER56
BTHR104

site_idSWS_FT_FI4
Number of Residues10
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00924, ECO:0000269|PubMed:27633330, ECO:0000269|PubMed:27866982, ECO:0000269|PubMed:28031359
ChainResidueDetails
AGLY86
BVAL132
ATRP87
ALYS105
AASP131
AVAL132
BGLY86
BTRP87
BLYS105
BASP131

site_idSWS_FT_FI5
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:27633330, ECO:0000269|PubMed:27866982, ECO:0000269|PubMed:28031359
ChainResidueDetails
AHIS110
AGLU111
AASP146
BHIS110
BGLU111
BASP146

site_idSWS_FT_FI6
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00924
ChainResidueDetails
AILE147
ATYR220
BILE147
BTYR220

site_idSWS_FT_FI7
Number of Residues14
DetailsSITE: mRNA cap binding => ECO:0000255|PROSITE-ProRule:PRU00924
ChainResidueDetails
ALYS13
BPHE24
BLYS28
BSER150
BARG213
BSER215
AASN17
APHE24
ALYS28
ASER150
AARG213
ASER215
BLYS13
BASN17

site_idSWS_FT_FI8
Number of Residues4
DetailsSITE: mRNA cap binding; via carbonyl oxygen => ECO:0000255|PROSITE-ProRule:PRU00924
ChainResidueDetails
ALEU16
AMET19
BLEU16
BMET19

site_idSWS_FT_FI9
Number of Residues6
DetailsSITE: Essential for 2'-O-methyltransferase activity => ECO:0000255|PROSITE-ProRule:PRU00924
ChainResidueDetails
ALYS61
ALYS182
AGLU218
BLYS61
BLYS182
BGLU218

site_idSWS_FT_FI10
Number of Residues2
DetailsSITE: Essential for 2'-O-methyltransferase and N-7 methyltransferase activity => ECO:0000255|PROSITE-ProRule:PRU00924
ChainResidueDetails
AASP146
BASP146

site_idSWS_FT_FI11
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P03314
ChainResidueDetails
ASER56
BSER56

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PDB entries from 2025-06-25

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