5ULK
Crystal Structure of RNF165 in complex with a UbcH5b~Ub conjugate
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0000209 | biological_process | protein polyubiquitination |
A | 0004842 | molecular_function | ubiquitin-protein transferase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005524 | molecular_function | ATP binding |
A | 0005634 | cellular_component | nucleus |
A | 0005654 | cellular_component | nucleoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006511 | biological_process | ubiquitin-dependent protein catabolic process |
A | 0016567 | biological_process | protein ubiquitination |
A | 0016740 | molecular_function | transferase activity |
A | 0032991 | cellular_component | protein-containing complex |
A | 0036211 | biological_process | protein modification process |
A | 0051865 | biological_process | protein autoubiquitination |
A | 0061630 | molecular_function | ubiquitin protein ligase activity |
A | 0061631 | molecular_function | ubiquitin conjugating enzyme activity |
A | 0070062 | cellular_component | extracellular exosome |
A | 0070936 | biological_process | protein K48-linked ubiquitination |
C | 0008270 | molecular_function | zinc ion binding |
C | 0061630 | molecular_function | ubiquitin protein ligase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | binding site for residue ZN C 401 |
Chain | Residue |
C | CYS312 |
C | HIS314 |
C | CYS331 |
C | CYS334 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue ZN C 402 |
Chain | Residue |
C | CYS294 |
C | CYS297 |
C | HIS317 |
C | CYS320 |
Functional Information from PROSITE/UniProt
site_id | PS00299 |
Number of Residues | 26 |
Details | UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD |
Chain | Residue | Details |
B | LYS27-ASP52 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 146 |
Details | Domain: {"description":"UBC core","evidences":[{"source":"PROSITE-ProRule","id":"PRU00388","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 1 |
Details | Active site: {"description":"Glycyl thioester intermediate","evidences":[{"source":"PROSITE-ProRule","id":"PRU00388","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10133","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 41 |
Details | Zinc finger: {"description":"RING-type; atypical","evidences":[{"source":"PROSITE-ProRule","id":"PRU00175","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | Region: {"description":"Ubiquitin binding","evidences":[{"source":"PubMed","id":"26656854","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5D0K","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 4 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"26656854","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5D0I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5D0K","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5D0M","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |