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5UGM

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with Edaglitazone

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0004879molecular_functionnuclear receptor activity
A0005634cellular_componentnucleus
A0006355biological_processregulation of DNA-templated transcription
B0003677molecular_functionDNA binding
B0004879molecular_functionnuclear receptor activity
B0005634cellular_componentnucleus
B0006355biological_processregulation of DNA-templated transcription
Functional Information from PDB Data
site_idAC1
Number of Residues14
Detailsbinding site for residue 8A7 A 501
ChainResidue
APHE282
AHIS449
ALEU469
ATYR473
AKNA503
AHOH692
ACYS285
ASER289
AHIS323
ATYR327
ALEU330
AILE341
ASER342
AMET364

site_idAC2
Number of Residues14
Detailsbinding site for residue 8A7 A 502
ChainResidue
AILE267
APRO269
ALEU270
AGLN271
APHE287
ASER464
AHIS466
APRO467
AHOH744
BVAL293
BTHR297
BVAL315
BLEU468
BHOH647

site_idAC3
Number of Residues10
Detailsbinding site for residue KNA A 503
ChainResidue
APHE264
AHIS266
AARG280
AGLN283
APHE287
ASER342
A8A7501
AHOH665
AHOH668
AHOH693

site_idAC4
Number of Residues16
Detailsbinding site for residue 8A7 B 501
ChainResidue
BPHE264
BPHE282
BCYS285
BSER289
BHIS323
BTYR327
BLEU330
BILE341
BSER342
BMET364
BLYS367
BHIS449
BLEU469
BTYR473
BKNA503
BHOH730

site_idAC5
Number of Residues15
Detailsbinding site for residue 8A7 B 502
ChainResidue
AVAL293
ATHR297
AVAL315
ALEU468
AILE472
AHOH610
AHOH621
BPRO269
BLEU270
BGLN271
BPHE287
BSER464
BHIS466
BPRO467
BHOH758

site_idAC6
Number of Residues9
Detailsbinding site for residue KNA B 503
ChainResidue
BPHE264
BLYS265
BHIS266
BARG280
BGLN283
B8A7501
BHOH628
BHOH669
BHOH689

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues530
DetailsDomain: {"description":"NR LBD","evidences":[{"source":"PROSITE-ProRule","id":"PRU01189","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues16
DetailsMotif: {"description":"9aaTAD","evidences":[{"source":"PubMed","id":"30468856","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"9744270","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2PRG","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"36737649","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

242842

PDB entries from 2025-10-08

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