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5UFH

The crystal structure of a LacI-type transcription regulator from Bifidobacterium animalis subsp. lactis DSM 10140

Functional Information from GO Data
ChainGOidnamespacecontents
A0000976molecular_functiontranscription cis-regulatory region binding
A0003677molecular_functionDNA binding
A0003700molecular_functionDNA-binding transcription factor activity
A0006355biological_processregulation of DNA-templated transcription
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue GOL A 401
ChainResidue
APHE76
AARG206
ALEU232
AASN258
AASP286
AHOH547
AHOH585

site_idAC2
Number of Residues8
Detailsbinding site for residue NO3 A 402
ChainResidue
AVAL163
AGLU164
ATHR331
ANO3407
AHOH593
AHOH609
APRO161
AASN162

site_idAC3
Number of Residues6
Detailsbinding site for residue NO3 A 403
ChainResidue
AARG250
AARG272
AARG310
ANO3404
ANO3422
AHOH586

site_idAC4
Number of Residues9
Detailsbinding site for residue NO3 A 404
ChainResidue
AMSE245
AASP246
AGLY248
AARG250
AARG272
AHIS311
ANO3403
AHOH502
AHOH548

site_idAC5
Number of Residues9
Detailsbinding site for residue NO3 A 405
ChainResidue
AGLN74
APRO75
APHE76
AASN258
AASP259
AALA260
AASP286
AVAL288
AHOH547

site_idAC6
Number of Residues6
Detailsbinding site for residue NO3 A 406
ChainResidue
AGLU164
AARG167
ATYR168
AASN171
AHOH508
AHOH570

site_idAC7
Number of Residues6
Detailsbinding site for residue NO3 A 407
ChainResidue
AVAL163
AGLU164
AARG167
ANO3402
AHOH503
AHOH645

site_idAC8
Number of Residues4
Detailsbinding site for residue NO3 A 408
ChainResidue
AHIS304
ASER307
ATYR330
AASP333

site_idAC9
Number of Residues5
Detailsbinding site for residue NO3 A 409
ChainResidue
AHIS304
AILE305
AASP306
ASER307
ANO3422

site_idAD1
Number of Residues8
Detailsbinding site for residue NO3 A 410
ChainResidue
APHE70
ATYR100
AASN103
AGLY106
ALEU107
AASP127
AHIS128
ANO3411

site_idAD2
Number of Residues6
Detailsbinding site for residue NO3 A 411
ChainResidue
AHIS105
ALEU107
AALA108
AHIS128
AMSE136
ANO3410

site_idAD3
Number of Residues6
Detailsbinding site for residue NO3 A 412
ChainResidue
APRO142
ALEU143
AARG319
ALYS327
AHOH509
AHOH534

site_idAD4
Number of Residues6
Detailsbinding site for residue NO3 A 413
ChainResidue
ALEU266
AGLN270
AASN295
AASN295
APRO296
AHOH516

site_idAD5
Number of Residues3
Detailsbinding site for residue NO3 A 414
ChainResidue
AARG250
AASP279
AHOH550

site_idAD6
Number of Residues7
Detailsbinding site for residue NO3 A 415
ChainResidue
AASP246
AGLN247
AHIS311
AMSE315
ATYR330
AHOH522
AHOH600

site_idAD7
Number of Residues5
Detailsbinding site for residue NO3 A 416
ChainResidue
AASP314
AGLU318
AHIS91
AARG239
AASN242

site_idAD8
Number of Residues5
Detailsbinding site for residue NO3 A 417
ChainResidue
ASER228
AGLY229
AGLY230
AARG239
ATYR323

site_idAD9
Number of Residues5
Detailsbinding site for residue NO3 A 418
ChainResidue
ASER180
AILE181
ATYR214
AARG222
AHOH590

site_idAE1
Number of Residues3
Detailsbinding site for residue NO3 A 419
ChainResidue
ALEU174
AHOH513
AHOH627

site_idAE2
Number of Residues5
Detailsbinding site for residue NO3 A 420
ChainResidue
AASP175
ASER176
ALEU344
AHOH541
AHOH598

site_idAE3
Number of Residues4
Detailsbinding site for residue NO3 A 421
ChainResidue
ATYR168
APHE334
ATHR335
ALEU336

site_idAE4
Number of Residues5
Detailsbinding site for residue NO3 A 422
ChainResidue
ASER307
AARG310
ANO3403
ANO3409
AHOH502

site_idAE5
Number of Residues6
Detailsbinding site for residue NO3 A 423
ChainResidue
ALEU226
APHE227
ASER228
ATYR323
AHOH583
AHOH616

Functional Information from PROSITE/UniProt
site_idPS00356
Number of Residues19
DetailsHTH_LACI_1 LacI-type HTH domain signature. IkDVAaeAgVSfkTVsnVI
ChainResidueDetails
AILE7-ILE25

221051

PDB entries from 2024-06-12

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