5U8W
Dihydrolipoamide dehydrogenase (LpdG) from Pseudomonas aeruginosa bound to NADH
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0004148 | molecular_function | dihydrolipoyl dehydrogenase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016668 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
A | 0050660 | molecular_function | flavin adenine dinucleotide binding |
B | 0000166 | molecular_function | nucleotide binding |
B | 0004148 | molecular_function | dihydrolipoyl dehydrogenase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016668 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
B | 0050660 | molecular_function | flavin adenine dinucleotide binding |
C | 0000166 | molecular_function | nucleotide binding |
C | 0004148 | molecular_function | dihydrolipoyl dehydrogenase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016668 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
C | 0050660 | molecular_function | flavin adenine dinucleotide binding |
D | 0000166 | molecular_function | nucleotide binding |
D | 0004148 | molecular_function | dihydrolipoyl dehydrogenase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016668 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
D | 0050660 | molecular_function | flavin adenine dinucleotide binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 40 |
Details | binding site for residue FAD A 501 |
Chain | Residue |
A | ILE10 |
A | THR48 |
A | CYS49 |
A | VAL52 |
A | GLY53 |
A | CYS54 |
A | SER57 |
A | LYS58 |
A | GLY120 |
A | HIS121 |
A | GLY122 |
A | GLY11 |
A | ALA150 |
A | SER151 |
A | GLY152 |
A | SER171 |
A | ARG279 |
A | GLY318 |
A | ASP319 |
A | MET325 |
A | LEU326 |
A | ALA327 |
A | GLY13 |
A | HIS328 |
A | TYR358 |
A | NAI502 |
A | HOH605 |
A | HOH645 |
A | HOH659 |
A | HOH661 |
A | HOH690 |
A | HOH870 |
B | HIS451 |
A | PRO14 |
B | PRO452 |
A | GLY15 |
A | GLU34 |
A | LYS35 |
A | TYR36 |
A | GLY47 |
site_id | AC2 |
Number of Residues | 29 |
Details | binding site for residue NAI A 502 |
Chain | Residue |
A | ILE187 |
A | GLY188 |
A | GLY190 |
A | VAL191 |
A | ILE192 |
A | GLU195 |
A | LEU210 |
A | GLU211 |
A | ALA212 |
A | LEU213 |
A | ALA276 |
A | VAL277 |
A | GLY278 |
A | ARG279 |
A | MET325 |
A | LEU326 |
A | VAL356 |
A | TYR358 |
A | FAD501 |
A | HOH610 |
A | HOH626 |
A | HOH632 |
A | HOH634 |
A | HOH644 |
A | HOH667 |
A | HOH683 |
A | HOH697 |
A | HOH710 |
A | HOH757 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue DMS A 503 |
Chain | Residue |
A | ALA389 |
A | GLY391 |
A | HOH641 |
A | HOH798 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue DMS A 504 |
Chain | Residue |
A | TYR17 |
A | ALA327 |
A | SER331 |
B | HIS451 |
B | HIS471 |
site_id | AC5 |
Number of Residues | 3 |
Details | binding site for residue DMS A 505 |
Chain | Residue |
A | TYR36 |
A | GLY47 |
A | THR48 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue DMS A 506 |
Chain | Residue |
A | ASN397 |
A | ASP398 |
A | THR399 |
site_id | AC7 |
Number of Residues | 6 |
Details | binding site for residue DMS A 507 |
Chain | Residue |
A | TYR65 |
A | GLU69 |
A | ALA73 |
A | ALA396 |
A | ASN397 |
A | ASP398 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue DMS A 508 |
Chain | Residue |
A | ASP214 |
A | PHE216 |
A | HOH613 |
A | HOH756 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue DMS A 509 |
Chain | Residue |
B | SER331 |
A | HIS451 |
A | HIS471 |
A | HOH629 |
B | TYR17 |
B | ALA327 |
site_id | AD1 |
Number of Residues | 39 |
Details | binding site for residue FAD B 501 |
Chain | Residue |
A | HIS451 |
A | PRO452 |
B | ILE10 |
B | GLY11 |
B | GLY13 |
B | PRO14 |
B | GLY15 |
B | ILE33 |
B | GLU34 |
B | TYR36 |
B | GLY47 |
B | THR48 |
B | CYS49 |
B | GLY53 |
B | CYS54 |
B | SER57 |
B | LYS58 |
B | GLY120 |
B | HIS121 |
B | GLY122 |
B | ALA150 |
B | SER151 |
B | GLY152 |
B | SER153 |
B | ARG279 |
B | GLY318 |
B | ASP319 |
B | MET325 |
B | LEU326 |
B | ALA327 |
B | HIS328 |
B | TYR358 |
B | NAI502 |
B | DMS503 |
B | HOH625 |
B | HOH653 |
B | HOH657 |
B | HOH666 |
B | HOH885 |
site_id | AD2 |
Number of Residues | 26 |
Details | binding site for residue NAI B 502 |
Chain | Residue |
B | ILE187 |
B | GLY188 |
B | GLY190 |
B | VAL191 |
B | ILE192 |
B | GLU195 |
B | LEU210 |
B | GLU211 |
B | ALA212 |
B | LEU213 |
B | ALA276 |
B | VAL277 |
B | GLY278 |
B | ARG279 |
B | MET325 |
B | LEU326 |
B | VAL356 |
B | TYR358 |
B | FAD501 |
B | HOH651 |
B | HOH656 |
B | HOH660 |
B | HOH697 |
B | HOH834 |
B | HOH842 |
B | HOH868 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue DMS B 503 |
Chain | Residue |
B | TYR36 |
B | GLY47 |
B | VAL52 |
B | FAD501 |
B | HOH645 |
B | HOH746 |
site_id | AD4 |
Number of Residues | 3 |
Details | binding site for residue DMS B 504 |
Chain | Residue |
B | GLY383 |
B | THR384 |
B | ILE472 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue DMS B 505 |
Chain | Residue |
B | TYR65 |
B | GLU69 |
B | ASN397 |
B | ASP398 |
site_id | AD6 |
Number of Residues | 4 |
Details | binding site for residue DMS B 506 |
Chain | Residue |
B | TYR302 |
B | VAL303 |
B | LYS308 |
B | THR309 |
site_id | AD7 |
Number of Residues | 40 |
Details | binding site for residue FAD C 501 |
Chain | Residue |
C | ILE10 |
C | GLY11 |
C | GLY13 |
C | PRO14 |
C | GLY15 |
C | GLU34 |
C | LYS35 |
C | TYR36 |
C | GLY47 |
C | THR48 |
C | CYS49 |
C | VAL52 |
C | GLY53 |
C | CYS54 |
C | SER57 |
C | LYS58 |
C | GLY120 |
C | HIS121 |
C | GLY122 |
C | ALA150 |
C | SER151 |
C | GLY152 |
C | SER171 |
C | ARG279 |
C | GLY318 |
C | ASP319 |
C | MET325 |
C | LEU326 |
C | ALA327 |
C | HIS328 |
C | TYR358 |
C | NAI502 |
C | DMS504 |
C | HOH601 |
C | HOH615 |
C | HOH651 |
C | HOH677 |
C | HOH789 |
D | HIS451 |
D | PRO452 |
site_id | AD8 |
Number of Residues | 26 |
Details | binding site for residue NAI C 502 |
Chain | Residue |
C | ILE187 |
C | GLY188 |
C | GLY190 |
C | VAL191 |
C | ILE192 |
C | GLU195 |
C | LEU210 |
C | GLU211 |
C | ALA212 |
C | LEU213 |
C | ALA276 |
C | VAL277 |
C | GLY278 |
C | ARG279 |
C | MET325 |
C | LEU326 |
C | VAL356 |
C | TYR358 |
C | FAD501 |
C | HOH622 |
C | HOH628 |
C | HOH648 |
C | HOH669 |
C | HOH695 |
C | HOH701 |
C | HOH791 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue DMS C 503 |
Chain | Residue |
C | TYR17 |
C | SER331 |
D | HIS451 |
D | HIS471 |
site_id | AE1 |
Number of Residues | 6 |
Details | binding site for residue DMS C 504 |
Chain | Residue |
C | TYR36 |
C | GLY47 |
C | VAL52 |
C | FAD501 |
C | HOH620 |
C | HOH773 |
site_id | AE2 |
Number of Residues | 3 |
Details | binding site for residue DMS C 505 |
Chain | Residue |
C | ALA247 |
C | SER248 |
C | HOH606 |
site_id | AE3 |
Number of Residues | 5 |
Details | binding site for residue DMS C 506 |
Chain | Residue |
C | TYR65 |
C | GLU69 |
C | ALA73 |
C | ASN397 |
C | ASP398 |
site_id | AE4 |
Number of Residues | 5 |
Details | binding site for residue DMS C 507 |
Chain | Residue |
C | PHE385 |
C | ALA389 |
C | SER390 |
C | GLY391 |
C | HOH603 |
site_id | AE5 |
Number of Residues | 5 |
Details | binding site for residue DMS C 508 |
Chain | Residue |
C | HIS451 |
C | HIS471 |
D | TYR17 |
D | ALA327 |
D | SER331 |
site_id | AE6 |
Number of Residues | 37 |
Details | binding site for residue FAD D 501 |
Chain | Residue |
C | HIS451 |
C | PRO452 |
D | GLY11 |
D | GLY13 |
D | PRO14 |
D | GLY15 |
D | GLU34 |
D | LYS35 |
D | TYR36 |
D | GLY47 |
D | THR48 |
D | CYS49 |
D | VAL52 |
D | GLY53 |
D | CYS54 |
D | LYS58 |
D | GLY120 |
D | HIS121 |
D | GLY122 |
D | ALA150 |
D | SER151 |
D | GLY152 |
D | SER153 |
D | SER171 |
D | ARG279 |
D | GLY318 |
D | ASP319 |
D | MET325 |
D | LEU326 |
D | ALA327 |
D | HIS328 |
D | TYR358 |
D | NAI502 |
D | DMS503 |
D | HOH631 |
D | HOH632 |
D | HOH634 |
site_id | AE7 |
Number of Residues | 27 |
Details | binding site for residue NAI D 502 |
Chain | Residue |
D | ILE187 |
D | GLY188 |
D | GLY190 |
D | VAL191 |
D | ILE192 |
D | GLU195 |
D | LEU210 |
D | GLU211 |
D | ALA212 |
D | LEU213 |
D | ALA243 |
D | ARG244 |
D | VAL245 |
D | ALA276 |
D | VAL277 |
D | GLY278 |
D | ARG279 |
D | MET325 |
D | LEU326 |
D | VAL356 |
D | TYR358 |
D | FAD501 |
D | HOH612 |
D | HOH626 |
D | HOH630 |
D | HOH660 |
D | HOH672 |
site_id | AE8 |
Number of Residues | 6 |
Details | binding site for residue DMS D 503 |
Chain | Residue |
D | TYR36 |
D | GLY47 |
D | THR48 |
D | VAL52 |
D | FAD501 |
D | HOH657 |
site_id | AE9 |
Number of Residues | 4 |
Details | binding site for residue DMS D 504 |
Chain | Residue |
D | ASN397 |
D | ASP398 |
D | THR399 |
D | HOH604 |
site_id | AF1 |
Number of Residues | 5 |
Details | binding site for residue DMS D 505 |
Chain | Residue |
D | ALA389 |
D | SER390 |
D | GLY391 |
D | HIS471 |
D | HOH602 |
Functional Information from PROSITE/UniProt
site_id | PS00076 |
Number of Residues | 11 |
Details | PYRIDINE_REDOX_1 Pyridine nucleotide-disulphide oxidoreductases class-I active site. GGtCLnvGCIP |
Chain | Residue | Details |
A | GLY46-PRO56 |