5U8U
Dihydrolipoamide dehydrogenase (LpdG) from Pseudomonas aeruginosa
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004148 | molecular_function | dihydrolipoyl dehydrogenase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016668 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
A | 0050660 | molecular_function | flavin adenine dinucleotide binding |
B | 0004148 | molecular_function | dihydrolipoyl dehydrogenase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016668 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
B | 0050660 | molecular_function | flavin adenine dinucleotide binding |
C | 0004148 | molecular_function | dihydrolipoyl dehydrogenase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016668 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
C | 0050660 | molecular_function | flavin adenine dinucleotide binding |
D | 0004148 | molecular_function | dihydrolipoyl dehydrogenase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016668 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
D | 0050660 | molecular_function | flavin adenine dinucleotide binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 37 |
Details | binding site for residue FAD A 501 |
Chain | Residue |
A | ILE10 |
A | CYS49 |
A | GLY53 |
A | CYS54 |
A | LYS58 |
A | GLY120 |
A | HIS121 |
A | GLY122 |
A | ALA150 |
A | SER151 |
A | GLY152 |
A | GLY11 |
A | SER153 |
A | ILE192 |
A | ARG279 |
A | GLY318 |
A | ASP319 |
A | MET325 |
A | LEU326 |
A | ALA327 |
A | HIS328 |
A | TYR358 |
A | GLY13 |
A | DMS504 |
A | HOH664 |
A | HOH668 |
A | HOH671 |
A | HOH698 |
A | HOH912 |
B | HIS451 |
B | PRO452 |
A | PRO14 |
A | GLY15 |
A | GLU34 |
A | TYR36 |
A | GLY47 |
A | THR48 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue DMS A 502 |
Chain | Residue |
A | ASN397 |
A | ASP398 |
A | THR399 |
A | HOH614 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue DMS A 503 |
Chain | Residue |
A | ILE353 |
A | SER355 |
A | HOH663 |
site_id | AC4 |
Number of Residues | 7 |
Details | binding site for residue DMS A 504 |
Chain | Residue |
A | TYR36 |
A | GLY47 |
A | THR48 |
A | VAL52 |
A | FAD501 |
A | HOH687 |
A | HOH723 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue DMS A 505 |
Chain | Residue |
A | TYR65 |
A | GLU69 |
A | ALA73 |
A | ASN397 |
A | ASP398 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue DMS A 506 |
Chain | Residue |
A | PHE385 |
A | ALA389 |
A | GLY391 |
A | HIS471 |
A | HOH608 |
site_id | AC7 |
Number of Residues | 5 |
Details | binding site for residue DMS A 507 |
Chain | Residue |
A | ASP214 |
A | LYS215 |
A | PHE216 |
A | LEU241 |
A | HOH669 |
site_id | AC8 |
Number of Residues | 7 |
Details | binding site for residue DMS A 508 |
Chain | Residue |
A | TYR17 |
A | ALA327 |
A | SER331 |
A | HOH659 |
B | HIS451 |
B | HIS471 |
B | HOH607 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue DMS A 509 |
Chain | Residue |
A | HIS451 |
A | HIS471 |
A | HOH612 |
B | TYR17 |
B | ALA327 |
B | SER331 |
site_id | AD1 |
Number of Residues | 37 |
Details | binding site for residue FAD B 501 |
Chain | Residue |
B | SER151 |
B | GLY152 |
B | SER153 |
B | ARG279 |
B | GLY318 |
B | ASP319 |
B | MET325 |
B | LEU326 |
B | ALA327 |
B | HIS328 |
B | TYR358 |
B | DMS502 |
B | HOH665 |
B | HOH677 |
B | HOH718 |
B | HOH785 |
B | HOH941 |
A | HIS451 |
A | PRO452 |
B | ILE10 |
B | GLY11 |
B | GLY13 |
B | PRO14 |
B | GLY15 |
B | GLU34 |
B | LYS35 |
B | TYR36 |
B | GLY47 |
B | THR48 |
B | CYS49 |
B | GLY53 |
B | CYS54 |
B | LYS58 |
B | GLY120 |
B | HIS121 |
B | GLY122 |
B | ALA150 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue DMS B 502 |
Chain | Residue |
B | TYR36 |
B | GLY47 |
B | VAL52 |
B | FAD501 |
B | HOH666 |
B | HOH780 |
site_id | AD3 |
Number of Residues | 4 |
Details | binding site for residue DMS B 503 |
Chain | Residue |
B | ASN397 |
B | ASP398 |
B | THR399 |
B | HOH639 |
site_id | AD4 |
Number of Residues | 5 |
Details | binding site for residue DMS B 504 |
Chain | Residue |
B | TYR65 |
B | GLU69 |
B | ALA73 |
B | ASN397 |
B | ASP398 |
site_id | AD5 |
Number of Residues | 5 |
Details | binding site for residue DMS B 505 |
Chain | Residue |
B | PRO160 |
B | PRO162 |
B | ALA247 |
B | SER248 |
B | HOH710 |
site_id | AD6 |
Number of Residues | 4 |
Details | binding site for residue DMS B 506 |
Chain | Residue |
B | LEU326 |
B | ILE353 |
B | SER355 |
B | HOH622 |
site_id | AD7 |
Number of Residues | 5 |
Details | binding site for residue DMS B 507 |
Chain | Residue |
B | GLY383 |
B | THR384 |
B | ILE472 |
B | ALA473 |
B | HOH914 |
site_id | AD8 |
Number of Residues | 5 |
Details | binding site for residue DMS B 508 |
Chain | Residue |
B | PHE385 |
B | ALA389 |
B | GLY391 |
B | HIS471 |
B | HOH625 |
site_id | AD9 |
Number of Residues | 3 |
Details | binding site for residue DMS B 509 |
Chain | Residue |
B | ASP304 |
B | ASP305 |
B | HOH641 |
site_id | AE1 |
Number of Residues | 5 |
Details | binding site for residue DMS B 510 |
Chain | Residue |
B | TYR67 |
B | THR85 |
B | ILE86 |
B | LEU203 |
B | HOH1190 |
site_id | AE2 |
Number of Residues | 3 |
Details | binding site for residue DMS B 511 |
Chain | Residue |
B | PHE216 |
B | LEU241 |
B | HOH684 |
site_id | AE3 |
Number of Residues | 4 |
Details | binding site for residue DMS B 512 |
Chain | Residue |
B | ALA212 |
B | LEU213 |
B | ASP214 |
B | HOH800 |
site_id | AE4 |
Number of Residues | 39 |
Details | binding site for residue FAD C 501 |
Chain | Residue |
C | ILE10 |
C | GLY11 |
C | GLY13 |
C | PRO14 |
C | GLY15 |
C | GLU34 |
C | LYS35 |
C | TYR36 |
C | GLY47 |
C | THR48 |
C | CYS49 |
C | GLY53 |
C | CYS54 |
C | LYS58 |
C | GLY120 |
C | HIS121 |
C | GLY122 |
C | ALA150 |
C | SER151 |
C | GLY152 |
C | SER153 |
C | SER171 |
C | ARG279 |
C | GLY318 |
C | ASP319 |
C | MET325 |
C | LEU326 |
C | ALA327 |
C | HIS328 |
C | TYR358 |
C | DMS505 |
C | HOH605 |
C | HOH680 |
C | HOH684 |
C | HOH709 |
C | HOH839 |
C | HOH952 |
D | HIS451 |
D | PRO452 |
site_id | AE5 |
Number of Residues | 4 |
Details | binding site for residue DMS C 502 |
Chain | Residue |
C | ASN397 |
C | ASP398 |
C | THR399 |
C | HOH636 |
site_id | AE6 |
Number of Residues | 4 |
Details | binding site for residue DMS C 503 |
Chain | Residue |
C | GLY383 |
C | THR384 |
C | ALA464 |
C | ILE472 |
site_id | AE7 |
Number of Residues | 5 |
Details | binding site for residue DMS C 504 |
Chain | Residue |
C | ALA389 |
C | GLY391 |
C | HIS471 |
C | HOH736 |
C | HOH1013 |
site_id | AE8 |
Number of Residues | 6 |
Details | binding site for residue DMS C 505 |
Chain | Residue |
C | TYR36 |
C | GLY47 |
C | VAL52 |
C | FAD501 |
C | HOH678 |
C | HOH703 |
site_id | AE9 |
Number of Residues | 6 |
Details | binding site for residue DMS C 506 |
Chain | Residue |
C | ILE239 |
C | ARG240 |
C | LEU241 |
C | HOH727 |
C | HOH895 |
C | HOH1107 |
site_id | AF1 |
Number of Residues | 3 |
Details | binding site for residue DMS C 507 |
Chain | Residue |
C | ASP214 |
C | PHE216 |
C | HOH758 |
site_id | AF2 |
Number of Residues | 4 |
Details | binding site for residue DMS C 508 |
Chain | Residue |
C | TYR65 |
C | GLU69 |
C | ALA73 |
C | ASN397 |
site_id | AF3 |
Number of Residues | 6 |
Details | binding site for residue DMS C 509 |
Chain | Residue |
C | TYR17 |
C | ALA327 |
C | SER331 |
D | HIS451 |
D | HIS471 |
D | HOH612 |
site_id | AF4 |
Number of Residues | 4 |
Details | binding site for residue DMS C 510 |
Chain | Residue |
C | ARG202 |
C | GLN235 |
C | LEU237 |
C | HOH631 |
site_id | AF5 |
Number of Residues | 4 |
Details | binding site for residue DMS C 511 |
Chain | Residue |
C | ALA212 |
C | LEU213 |
C | ASP214 |
C | HOH804 |
site_id | AF6 |
Number of Residues | 38 |
Details | binding site for residue FAD D 501 |
Chain | Residue |
C | HIS451 |
C | PRO452 |
D | ILE10 |
D | GLY11 |
D | GLY13 |
D | PRO14 |
D | GLY15 |
D | ILE33 |
D | GLU34 |
D | TYR36 |
D | GLY47 |
D | THR48 |
D | CYS49 |
D | GLY53 |
D | CYS54 |
D | LYS58 |
D | GLY120 |
D | HIS121 |
D | GLY122 |
D | ALA150 |
D | SER151 |
D | GLY152 |
D | SER153 |
D | ILE192 |
D | ARG279 |
D | GLY318 |
D | ASP319 |
D | MET325 |
D | LEU326 |
D | ALA327 |
D | HIS328 |
D | TYR358 |
D | DMS503 |
D | HOH663 |
D | HOH680 |
D | HOH702 |
D | HOH761 |
D | HOH978 |
site_id | AF7 |
Number of Residues | 7 |
Details | binding site for residue DMS D 502 |
Chain | Residue |
D | GLY383 |
D | THR384 |
D | ALA464 |
D | ILE472 |
D | ALA473 |
D | ARG475 |
D | HOH891 |
site_id | AF8 |
Number of Residues | 6 |
Details | binding site for residue DMS D 503 |
Chain | Residue |
D | TYR36 |
D | GLY47 |
D | VAL52 |
D | FAD501 |
D | HOH664 |
D | HOH683 |
site_id | AF9 |
Number of Residues | 4 |
Details | binding site for residue DMS D 504 |
Chain | Residue |
D | LEU326 |
D | ILE353 |
D | SER355 |
D | HOH712 |
site_id | AG1 |
Number of Residues | 4 |
Details | binding site for residue DMS D 505 |
Chain | Residue |
D | GLU332 |
D | GLN347 |
D | ASN349 |
D | HOH657 |
site_id | AG2 |
Number of Residues | 5 |
Details | binding site for residue DMS D 506 |
Chain | Residue |
D | TYR65 |
D | ALA73 |
D | HIS360 |
D | ASN397 |
D | ASP398 |
site_id | AG3 |
Number of Residues | 5 |
Details | binding site for residue DMS D 507 |
Chain | Residue |
D | PRO160 |
D | PRO162 |
D | ALA247 |
D | SER248 |
D | HOH632 |
site_id | AG4 |
Number of Residues | 7 |
Details | binding site for residue DMS D 508 |
Chain | Residue |
C | HIS451 |
C | HIS471 |
C | HOH644 |
D | TYR17 |
D | ALA327 |
D | SER331 |
D | HOH679 |
site_id | AG5 |
Number of Residues | 6 |
Details | binding site for residue DMS D 509 |
Chain | Residue |
D | ALA389 |
D | SER390 |
D | GLY391 |
D | HIS451 |
D | HIS471 |
D | HOH624 |
site_id | AG6 |
Number of Residues | 2 |
Details | binding site for residue DMS D 510 |
Chain | Residue |
D | PHE216 |
D | HOH755 |
site_id | AG7 |
Number of Residues | 4 |
Details | binding site for residue DMS D 511 |
Chain | Residue |
D | ALA212 |
D | LEU213 |
D | ASP214 |
D | HOH817 |
Functional Information from PROSITE/UniProt
site_id | PS00076 |
Number of Residues | 11 |
Details | PYRIDINE_REDOX_1 Pyridine nucleotide-disulphide oxidoreductases class-I active site. GGtCLnvGCIP |
Chain | Residue | Details |
A | GLY46-PRO56 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: Proton acceptor => ECO:0000250 |
Chain | Residue | Details |
A | HIS451 | |
B | HIS451 | |
C | HIS451 | |
D | HIS451 |
site_id | SWS_FT_FI2 |
Number of Residues | 36 |
Details | BINDING: BINDING => ECO:0000250 |
Chain | Residue | Details |
A | ALA327 | |
B | GLU34 | |
B | LYS58 | |
B | GLY122 | |
B | GLY188 | |
B | GLU211 | |
B | VAL245 | |
B | ALA276 | |
B | ASP319 | |
B | ALA327 | |
C | GLU34 | |
C | LYS58 | |
C | GLY122 | |
C | GLY188 | |
C | GLU211 | |
C | VAL245 | |
C | ALA276 | |
C | ASP319 | |
C | ALA327 | |
D | GLU34 | |
D | LYS58 | |
D | GLY122 | |
D | GLY188 | |
D | GLU211 | |
D | VAL245 | |
D | ALA276 | |
D | ASP319 | |
D | ALA327 | |
A | GLU34 | |
A | LYS58 | |
A | GLY122 | |
A | GLY188 | |
A | GLU211 | |
A | VAL245 | |
A | ALA276 | |
A | ASP319 |