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5TRW

Crystal structure of Pyridoxamine kinase PDXY from Burkholderia xenovorans

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0005524molecular_functionATP binding
A0005829cellular_componentcytosol
A0008478molecular_functionpyridoxal kinase activity
A0009443biological_processpyridoxal 5'-phosphate salvage
A0016301molecular_functionkinase activity
A0042816biological_processvitamin B6 metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue NO3 A 400
ChainResidue
AARG208
ALEU210
ATYR211
APHE213
AVAL253
AHOH545

site_idAC2
Number of Residues7
Detailsbinding site for residue NO3 A 401
ChainResidue
AGLY260
AARG261
AHOH501
AHOH509
AGLN150
AGLY154
AARG155

site_idAC3
Number of Residues3
Detailsbinding site for residue NHE A 402
ChainResidue
ATRP108
AASP140
ALEU233

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 403
ChainResidue
AGLN128
AGLU129
AARG133
AALA214
AHOH538

site_idAC5
Number of Residues2
Detailsbinding site for residue CL A 404
ChainResidue
AARG27
AARG27

site_idAC6
Number of Residues3
Detailsbinding site for residue CL A 405
ChainResidue
AASN145
AHIS146
ATHR147

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO A 406
ChainResidue
AGLU202
AALA203
ATRP204
AASP286
AHOH703

site_idAC8
Number of Residues4
Detailsbinding site for residue EDO A 407
ChainResidue
AALA240
AGLU243
ATRP279
AHOH607

site_idAC9
Number of Residues3
Detailsbinding site for residue EDO A 408
ChainResidue
AHIS49
ATRP50
AHOH508

site_idAD1
Number of Residues4
Detailsbinding site for residue EDO A 409
ChainResidue
AASP65
AGLU95
AARG239
AHOH631

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues7
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01639
ChainResidueDetails
AASP112
AALA143
AGLU148
ALYS181
AASP222
ASER10
ATHR45

221051

PDB entries from 2024-06-12

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