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5TPR

Desmethyl-4-deoxygadusol synthase from Anabaena variabilis (Ava_3858) with NAD+ and Zn2+ bound

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003856molecular_function3-dehydroquinate synthase activity
A0016829molecular_functionlyase activity
A0017000biological_processantibiotic biosynthetic process
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0003856molecular_function3-dehydroquinate synthase activity
B0016829molecular_functionlyase activity
B0017000biological_processantibiotic biosynthetic process
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue ZN A 501
ChainResidue
AASP150
AGLU198
AHIS271
AHIS287
ANAD503
AHOH608
AHOH852

site_idAC2
Number of Residues9
Detailsbinding site for residue SO4 A 502
ChainResidue
ALEU120
ATHR144
AILE146
ANAD503
AHOH621
AHOH649
AHOH767
AGLY118
AGLY119

site_idAC3
Number of Residues40
Detailsbinding site for residue NAD A 503
ChainResidue
AASP56
AASN58
AVAL59
ALEU62
AGLU87
ALYS90
AGLY118
AGLY119
ALEU120
AASP123
ATHR143
ATHR144
AILE146
AASP150
AALA151
AALA154
ALYS156
ALYS165
AASN166
ALEU183
ATHR186
ALEU187
AGLN191
AASN194
AZN501
ASO4502
AHOH612
AHOH621
AHOH649
AHOH677
AHOH753
AHOH759
AHOH767
AHOH768
AHOH769
AHOH799
AHOH812
AHOH830
AHOH914
AHOH926

site_idAC4
Number of Residues8
Detailsbinding site for residue SO4 A 504
ChainResidue
ALYS156
AASN166
AHOH648
AHOH702
AHOH719
AHOH865
AHOH910
BARG134

site_idAC5
Number of Residues7
Detailsbinding site for residue SO4 A 505
ChainResidue
ALEU164
AARG167
ASER343
ALEU346
AHOH661
AHOH681
AHOH893

site_idAC6
Number of Residues7
Detailsbinding site for residue PEG A 506
ChainResidue
AHIS240
ATYR244
ALYS245
AHOH711
BGLU12
BHOH703
BHOH762

site_idAC7
Number of Residues3
Detailsbinding site for residue GOL A 507
ChainResidue
AGLU12
AHOH766
BHIS240

site_idAC8
Number of Residues7
Detailsbinding site for residue ZN B 501
ChainResidue
BASP150
BGLU198
BHIS271
BHIS287
BNAD502
BHOH625
BHOH1001

site_idAC9
Number of Residues35
Detailsbinding site for residue NAD B 502
ChainResidue
BILE146
BASP150
BALA151
BALA154
BLYS156
BLYS165
BASN166
BLEU183
BTHR186
BLEU187
BGLN191
BASN194
BZN501
BSO4507
BHOH621
BHOH638
BHOH641
BHOH643
BHOH660
BHOH680
BHOH695
BHOH838
BHOH855
BHOH947
BASP56
BASN58
BVAL59
BGLU87
BLYS90
BGLY118
BGLY119
BLEU120
BASP123
BTHR143
BTHR144

site_idAD1
Number of Residues8
Detailsbinding site for residue SO4 B 503
ChainResidue
AARG134
BLYS156
BASN166
BHOH692
BHOH756
BHOH815
BHOH876
BHOH927

site_idAD2
Number of Residues9
Detailsbinding site for residue SO4 B 504
ChainResidue
ALYS106
BLEU164
BARG167
BSER343
BLEU346
BHOH630
BHOH771
BHOH814
BHOH833

site_idAD3
Number of Residues13
Detailsbinding site for residue PEG B 505
ChainResidue
BTHR186
BLEU187
BPRO188
BTHR189
BHIS225
BASP333
BILE334
BASP335
BHOH624
BHOH801
BHOH846
BHOH935
BHOH941

site_idAD4
Number of Residues7
Detailsbinding site for residue GOL B 506
ChainResidue
BLYS22
BILE23
BGLU24
BARG175
BHOH606
BHOH612
BHOH912

site_idAD5
Number of Residues8
Detailsbinding site for residue SO4 B 507
ChainResidue
BGLY118
BGLY119
BLEU120
BTHR144
BILE146
BNAD502
BHOH638
BHOH641

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:28182402
ChainResidueDetails
AASP56
BGLY119
BTHR143
BLYS156
BLYS165
BLEU183
AGLU87
AGLY119
ATHR143
ALYS156
ALYS165
ALEU183
BASP56
BGLU87

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:28182402, ECO:0007744|PDB:5TPR
ChainResidueDetails
AGLU198
AHIS271
AHIS287
BGLU198
BHIS271
BHIS287

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PDB entries from 2024-08-21

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