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5TJZ

Structure of 4-Hydroxytetrahydrodipicolinate Reductase from Mycobacterium tuberculosis with NADPH and 2,6 Pyridine Dicarboxylic Acid

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0008839molecular_function4-hydroxy-tetrahydrodipicolinate reductase
A0009085biological_processlysine biosynthetic process
A0009089biological_processlysine biosynthetic process via diaminopimelate
A0009274cellular_componentpeptidoglycan-based cell wall
A0016491molecular_functionoxidoreductase activity
A0016726molecular_functionoxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor
A0019877biological_processdiaminopimelate biosynthetic process
A0050661molecular_functionNADP binding
A0051287molecular_functionNAD binding
A0070402molecular_functionNADPH binding
A0070404molecular_functionNADH binding
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue PDC A 301
ChainResidue
ATHR77
APHE217
ANAP304
AHOH424
AHOH447
APRO103
AASN104
AHIS133
ALYS136
ASER141
AGLY142
ATHR143
AALA192

site_idAC2
Number of Residues8
Detailsbinding site for residue BEZ A 302
ChainResidue
AMET59
AMET59
AARG83
AARG83
AIMD303
AIMD303
AHOH494
AHOH494

site_idAC3
Number of Residues10
Detailsbinding site for residue IMD A 303
ChainResidue
AMET59
AMET59
AGLY60
AGLY60
AGLU63
AGLU63
ATRP90
ATRP90
ABEZ302
ABEZ302

site_idAC4
Number of Residues37
Detailsbinding site for residue NAP A 304
ChainResidue
AGLY7
ALYS9
AGLY10
ALYS11
AVAL12
ALEU32
AASP33
AALA34
APHE52
ATHR53
AGLY75
ATHR76
ATHR77
AALA102
APRO103
AASN104
APHE105
ALYS136
APHE217
APDC301
AEDO307
AHOH402
AHOH416
AHOH421
AHOH424
AHOH440
AHOH447
AHOH449
AHOH459
AHOH480
AHOH484
AHOH491
AHOH518
AHOH522
AHOH523
AHOH563
AHOH566

site_idAC5
Number of Residues9
Detailsbinding site for residue AE3 A 305
ChainResidue
AILE129
ALEU131
ALEU190
AGLU195
AGLU195
ATHR204
AARG208
AASP210
AHOH429

site_idAC6
Number of Residues4
Detailsbinding site for residue CL A 306
ChainResidue
AARG146
ALEU238
AGLU239
AHOH479

site_idAC7
Number of Residues9
Detailsbinding site for residue EDO A 307
ChainResidue
ATHR53
AHIS54
AHIS135
ALYS136
AALA137
ANAP304
AEDO308
AHOH447
AHOH459

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 308
ChainResidue
AHIS54
AHIS135
AEDO307
AHOH416
AHOH425
AHOH454
AHOH468

site_idAC9
Number of Residues5
Detailsbinding site for residue EDO A 309
ChainResidue
AHOH487
AHOH497
AHOH602
AGLU63
APHE64

site_idAD1
Number of Residues4
Detailsbinding site for residue EDO A 310
ChainResidue
AGLY69
AASN96
ATHR97
AHOH668

site_idAD2
Number of Residues7
Detailsbinding site for residue EDO A 311
ChainResidue
AASP138
AALA139
APRO140
ATHR167
AHOH446
AHOH499
AHOH610

site_idAD3
Number of Residues2
Detailsbinding site for residue EDO A 312
ChainResidue
AASN161
AHOH413

site_idAD4
Number of Residues3
Detailsbinding site for residue EDO A 313
ChainResidue
ASO4315
AHOH401
AHOH510

site_idAD5
Number of Residues2
Detailsbinding site for residue EDO A 314
ChainResidue
APHE122
AASP124

site_idAD6
Number of Residues4
Detailsbinding site for residue SO4 A 315
ChainResidue
ALEU223
AEDO313
AHOH590
AHOH591

site_idAD7
Number of Residues4
Detailsbinding site for residue CL A 316
ChainResidue
ALYS94
APRO95
AASN96
ATHR97

site_idAD8
Number of Residues2
Detailsbinding site for residue CL A 317
ChainResidue
AALA81
ALYS149

site_idAD9
Number of Residues7
Detailsbinding site for residue EDO A 318
ChainResidue
AASP56
AVAL57
AHOH411
AHOH454
AHOH493
AHOH522
AHOH523

Functional Information from PROSITE/UniProt
site_idPS01298
Number of Residues18
DetailsDAPB Dihydrodipicolinate reductase signature. EViElHhphKaDapSGTA
ChainResidueDetails
AGLU127-ALA144

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00102
ChainResidueDetails
AHIS132

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton donor => ECO:0000305
ChainResidueDetails
ALYS136

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00102
ChainResidueDetails
AGLY7

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:12962488, ECO:0007744|PDB:1C3V
ChainResidueDetails
AGLY75
AALA102
ALYS11
ALYS136

site_idSWS_FT_FI5
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:12962488, ECO:0007744|PDB:1C3V, ECO:0007744|PDB:1P9L
ChainResidueDetails
AHIS133
AGLY142

site_idSWS_FT_FI6
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:12962488, ECO:0000269|PubMed:20057050, ECO:0007744|PDB:1P9L, ECO:0007744|PDB:1YL7
ChainResidueDetails
AASP33

227344

PDB entries from 2024-11-13

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