5T6R

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
D	0002181	biological_process	cytoplasmic translation
D	0003723	molecular_function	RNA binding
D	0003735	molecular_function	structural constituent of ribosome
D	0005737	cellular_component	cytoplasm
D	0005829	cellular_component	cytosol
D	0005840	cellular_component	ribosome
D	0006412	biological_process	translation
D	0019843	molecular_function	rRNA binding
D	0022625	cellular_component	cytosolic large ribosomal subunit
D	0022626	cellular_component	cytosolic ribosome
D	1990904	cellular_component	ribonucleoprotein complex
E	0000027	biological_process	ribosomal large subunit assembly
E	0002181	biological_process	cytoplasmic translation
E	0003723	molecular_function	RNA binding
E	0003735	molecular_function	structural constituent of ribosome
E	0005515	molecular_function	protein binding
E	0005737	cellular_component	cytoplasm
E	0005829	cellular_component	cytosol
E	0005840	cellular_component	ribosome
E	0006364	biological_process	rRNA processing
E	0006412	biological_process	translation
E	0022625	cellular_component	cytosolic large ribosomal subunit
E	1990145	biological_process	maintenance of translational fidelity
E	1990904	cellular_component	ribonucleoprotein complex
F	0002181	biological_process	cytoplasmic translation
F	0003723	molecular_function	RNA binding
F	0003735	molecular_function	structural constituent of ribosome
F	0005634	cellular_component	nucleus
F	0005737	cellular_component	cytoplasm
F	0005829	cellular_component	cytosol
F	0005840	cellular_component	ribosome
F	0006412	biological_process	translation
F	0022625	cellular_component	cytosolic large ribosomal subunit
F	1990904	cellular_component	ribonucleoprotein complex
G	0000027	biological_process	ribosomal large subunit assembly
G	0002181	biological_process	cytoplasmic translation
G	0003723	molecular_function	RNA binding
G	0003735	molecular_function	structural constituent of ribosome
G	0005515	molecular_function	protein binding
G	0005634	cellular_component	nucleus
G	0005737	cellular_component	cytoplasm
G	0005829	cellular_component	cytosol
G	0005840	cellular_component	ribosome
G	0006412	biological_process	translation
G	0008097	molecular_function	5S rRNA binding
G	0019843	molecular_function	rRNA binding
G	0022625	cellular_component	cytosolic large ribosomal subunit
G	1990904	cellular_component	ribonucleoprotein complex
H	0000027	biological_process	ribosomal large subunit assembly
H	0002181	biological_process	cytoplasmic translation
H	0003723	molecular_function	RNA binding
H	0003735	molecular_function	structural constituent of ribosome
H	0005737	cellular_component	cytoplasm
H	0005829	cellular_component	cytosol
H	0005840	cellular_component	ribosome
H	0006412	biological_process	translation
H	0022625	cellular_component	cytosolic large ribosomal subunit
H	1990904	cellular_component	ribonucleoprotein complex
I	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
I	0000470	biological_process	maturation of LSU-rRNA
I	0002181	biological_process	cytoplasmic translation
I	0003723	molecular_function	RNA binding
I	0003735	molecular_function	structural constituent of ribosome
I	0005737	cellular_component	cytoplasm
I	0005829	cellular_component	cytosol
I	0005840	cellular_component	ribosome
I	0022625	cellular_component	cytosolic large ribosomal subunit
I	0042273	biological_process	ribosomal large subunit biogenesis
I	1990904	cellular_component	ribonucleoprotein complex
J	0000470	biological_process	maturation of LSU-rRNA
J	0002181	biological_process	cytoplasmic translation
J	0003723	molecular_function	RNA binding
J	0003735	molecular_function	structural constituent of ribosome
J	0005737	cellular_component	cytoplasm
J	0005829	cellular_component	cytosol
J	0005840	cellular_component	ribosome
J	0022625	cellular_component	cytosolic large ribosomal subunit
J	0042254	biological_process	ribosome biogenesis
J	0043232	cellular_component	intracellular non-membrane-bounded organelle
J	1990904	cellular_component	ribonucleoprotein complex
K	0002181	biological_process	cytoplasmic translation
K	0003735	molecular_function	structural constituent of ribosome
K	0005737	cellular_component	cytoplasm
K	0005829	cellular_component	cytosol
K	0005840	cellular_component	ribosome
K	0006412	biological_process	translation
K	0019843	molecular_function	rRNA binding
K	0022625	cellular_component	cytosolic large ribosomal subunit
K	1990904	cellular_component	ribonucleoprotein complex
L	0000027	biological_process	ribosomal large subunit assembly
L	0002181	biological_process	cytoplasmic translation
L	0003735	molecular_function	structural constituent of ribosome
L	0005737	cellular_component	cytoplasm
L	0005829	cellular_component	cytosol
L	0005840	cellular_component	ribosome
L	0006412	biological_process	translation
L	0006415	biological_process	translational termination
L	0022625	cellular_component	cytosolic large ribosomal subunit
L	1990904	cellular_component	ribonucleoprotein complex
M	0000027	biological_process	ribosomal large subunit assembly
M	0002181	biological_process	cytoplasmic translation
M	0003723	molecular_function	RNA binding
M	0003735	molecular_function	structural constituent of ribosome
M	0005634	cellular_component	nucleus
M	0005737	cellular_component	cytoplasm
M	0005829	cellular_component	cytosol
M	0005840	cellular_component	ribosome
M	0006412	biological_process	translation
M	0019843	molecular_function	rRNA binding
M	0022625	cellular_component	cytosolic large ribosomal subunit
M	1990904	cellular_component	ribonucleoprotein complex
N	0002181	biological_process	cytoplasmic translation
N	0003723	molecular_function	RNA binding
N	0003735	molecular_function	structural constituent of ribosome
N	0005737	cellular_component	cytoplasm
N	0005829	cellular_component	cytosol
N	0005840	cellular_component	ribosome
N	0006412	biological_process	translation
N	0022625	cellular_component	cytosolic large ribosomal subunit
N	1990904	cellular_component	ribonucleoprotein complex
O	0002181	biological_process	cytoplasmic translation
O	0003723	molecular_function	RNA binding
O	0003735	molecular_function	structural constituent of ribosome
O	0005737	cellular_component	cytoplasm
O	0005829	cellular_component	cytosol
O	0005840	cellular_component	ribosome
O	0006412	biological_process	translation
O	0016236	biological_process	macroautophagy
O	0022625	cellular_component	cytosolic large ribosomal subunit
O	0032991	cellular_component	protein-containing complex
O	0042273	biological_process	ribosomal large subunit biogenesis
O	0043229	cellular_component	intracellular organelle
O	1990904	cellular_component	ribonucleoprotein complex
Q	0002181	biological_process	cytoplasmic translation
Q	0003735	molecular_function	structural constituent of ribosome
Q	0005737	cellular_component	cytoplasm
Q	0005829	cellular_component	cytosol
Q	0005840	cellular_component	ribosome
Q	0006412	biological_process	translation
Q	0008270	molecular_function	zinc ion binding
Q	0022625	cellular_component	cytosolic large ribosomal subunit
Q	0044391	cellular_component	ribosomal subunit
Q	0046677	biological_process	response to antibiotic
Q	0046898	biological_process	response to cycloheximide
Q	1990904	cellular_component	ribonucleoprotein complex
R	0002181	biological_process	cytoplasmic translation
R	0003735	molecular_function	structural constituent of ribosome
R	0005737	cellular_component	cytoplasm
R	0005829	cellular_component	cytosol
R	0005840	cellular_component	ribosome
R	0006412	biological_process	translation
R	0022625	cellular_component	cytosolic large ribosomal subunit
R	0044391	cellular_component	ribosomal subunit
R	0046872	molecular_function	metal ion binding
R	0070180	molecular_function	large ribosomal subunit rRNA binding
R	1990904	cellular_component	ribonucleoprotein complex
V	0000055	biological_process	ribosomal large subunit export from nucleus
V	0005634	cellular_component	nucleus
V	0005654	cellular_component	nucleoplasm
V	0005737	cellular_component	cytoplasm
V	0005829	cellular_component	cytosol
V	0008643	biological_process	carbohydrate transport
V	0015031	biological_process	protein transport
V	0015144	molecular_function	carbohydrate transmembrane transporter activity
V	0015768	biological_process	maltose transport
V	0034219	biological_process	carbohydrate transmembrane transport
V	0042956	biological_process	maltodextrin transmembrane transport
V	0043023	molecular_function	ribosomal large subunit binding
V	0055052	cellular_component	ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing
V	0055085	biological_process	transmembrane transport
V	0070180	molecular_function	large ribosomal subunit rRNA binding
V	0071702	biological_process	organic substance transport
V	1901982	molecular_function	maltose binding
a	0002181	biological_process	cytoplasmic translation
a	0003723	molecular_function	RNA binding
a	0003735	molecular_function	structural constituent of ribosome
a	0005737	cellular_component	cytoplasm
a	0005829	cellular_component	cytosol
a	0005840	cellular_component	ribosome
a	0006412	biological_process	translation
a	0022625	cellular_component	cytosolic large ribosomal subunit
a	0022626	cellular_component	cytosolic ribosome
a	1990904	cellular_component	ribonucleoprotein complex
b	0002181	biological_process	cytoplasmic translation
b	0003723	molecular_function	RNA binding
b	0003729	molecular_function	mRNA binding
b	0003735	molecular_function	structural constituent of ribosome
b	0005737	cellular_component	cytoplasm
b	0005829	cellular_component	cytosol
b	0005840	cellular_component	ribosome
b	0006412	biological_process	translation
b	0015934	cellular_component	large ribosomal subunit
b	0017148	biological_process	negative regulation of translation
b	0022625	cellular_component	cytosolic large ribosomal subunit
b	1990904	cellular_component	ribonucleoprotein complex
c	0000448	biological_process	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
c	0002181	biological_process	cytoplasmic translation
c	0003735	molecular_function	structural constituent of ribosome
c	0005737	cellular_component	cytoplasm
c	0005829	cellular_component	cytosol
c	0005840	cellular_component	ribosome
c	0006412	biological_process	translation
c	0015934	cellular_component	large ribosomal subunit
c	0022625	cellular_component	cytosolic large ribosomal subunit
c	0030687	cellular_component	preribosome, large subunit precursor
c	1990904	cellular_component	ribonucleoprotein complex
d	0002181	biological_process	cytoplasmic translation
d	0003723	molecular_function	RNA binding
d	0003735	molecular_function	structural constituent of ribosome
d	0005737	cellular_component	cytoplasm
d	0005829	cellular_component	cytosol
d	0005840	cellular_component	ribosome
d	0006412	biological_process	translation
d	0022625	cellular_component	cytosolic large ribosomal subunit
d	0043232	cellular_component	intracellular non-membrane-bounded organelle
d	1990904	cellular_component	ribonucleoprotein complex
e	0002181	biological_process	cytoplasmic translation
e	0003723	molecular_function	RNA binding
e	0003735	molecular_function	structural constituent of ribosome
e	0005737	cellular_component	cytoplasm
e	0005829	cellular_component	cytosol
e	0005840	cellular_component	ribosome
e	0006412	biological_process	translation
e	0022625	cellular_component	cytosolic large ribosomal subunit
e	1990904	cellular_component	ribonucleoprotein complex
f	0002181	biological_process	cytoplasmic translation
f	0003735	molecular_function	structural constituent of ribosome
f	0005737	cellular_component	cytoplasm
f	0005829	cellular_component	cytosol
f	0005840	cellular_component	ribosome
f	0006412	biological_process	translation
f	0022625	cellular_component	cytosolic large ribosomal subunit
f	1990904	cellular_component	ribonucleoprotein complex
g	0002181	biological_process	cytoplasmic translation
g	0003735	molecular_function	structural constituent of ribosome
g	0005737	cellular_component	cytoplasm
g	0005829	cellular_component	cytosol
g	0005840	cellular_component	ribosome
g	0006412	biological_process	translation
g	0022625	cellular_component	cytosolic large ribosomal subunit
g	1990904	cellular_component	ribonucleoprotein complex
h	0002181	biological_process	cytoplasmic translation
h	0003723	molecular_function	RNA binding
h	0003735	molecular_function	structural constituent of ribosome
h	0005737	cellular_component	cytoplasm
h	0005829	cellular_component	cytosol
h	0005840	cellular_component	ribosome
h	0006412	biological_process	translation
h	0022625	cellular_component	cytosolic large ribosomal subunit
h	1990904	cellular_component	ribonucleoprotein complex
i	0002181	biological_process	cytoplasmic translation
i	0003735	molecular_function	structural constituent of ribosome
i	0005737	cellular_component	cytoplasm
i	0005829	cellular_component	cytosol
i	0005840	cellular_component	ribosome
i	0006412	biological_process	translation
i	0022625	cellular_component	cytosolic large ribosomal subunit
i	0070180	molecular_function	large ribosomal subunit rRNA binding
i	1990904	cellular_component	ribonucleoprotein complex
j	0002181	biological_process	cytoplasmic translation
j	0003723	molecular_function	RNA binding
j	0003729	molecular_function	mRNA binding
j	0003735	molecular_function	structural constituent of ribosome
j	0005737	cellular_component	cytoplasm
j	0005829	cellular_component	cytosol
j	0005840	cellular_component	ribosome
j	0022625	cellular_component	cytosolic large ribosomal subunit
j	1990904	cellular_component	ribonucleoprotein complex
k	0000027	biological_process	ribosomal large subunit assembly
k	0002181	biological_process	cytoplasmic translation
k	0003723	molecular_function	RNA binding
k	0003735	molecular_function	structural constituent of ribosome
k	0005515	molecular_function	protein binding
k	0005737	cellular_component	cytoplasm
k	0005829	cellular_component	cytosol
k	0005840	cellular_component	ribosome
k	0006412	biological_process	translation
k	0019843	molecular_function	rRNA binding
k	0022625	cellular_component	cytosolic large ribosomal subunit
k	0030687	cellular_component	preribosome, large subunit precursor
k	1990904	cellular_component	ribonucleoprotein complex
l	0002181	biological_process	cytoplasmic translation
l	0003723	molecular_function	RNA binding
l	0003735	molecular_function	structural constituent of ribosome
l	0005737	cellular_component	cytoplasm
l	0005829	cellular_component	cytosol
l	0005840	cellular_component	ribosome
l	0006412	biological_process	translation
l	0015934	cellular_component	large ribosomal subunit
l	0022625	cellular_component	cytosolic large ribosomal subunit
l	0042273	biological_process	ribosomal large subunit biogenesis
l	1990904	cellular_component	ribonucleoprotein complex
m	0002181	biological_process	cytoplasmic translation
m	0003735	molecular_function	structural constituent of ribosome
m	0005737	cellular_component	cytoplasm
m	0005829	cellular_component	cytosol
m	0005840	cellular_component	ribosome
m	0006412	biological_process	translation
m	0022625	cellular_component	cytosolic large ribosomal subunit
m	1990904	cellular_component	ribonucleoprotein complex
n	0002181	biological_process	cytoplasmic translation
n	0003723	molecular_function	RNA binding
n	0003735	molecular_function	structural constituent of ribosome
n	0005634	cellular_component	nucleus
n	0005737	cellular_component	cytoplasm
n	0005829	cellular_component	cytosol
n	0005840	cellular_component	ribosome
n	0006412	biological_process	translation
n	0015934	cellular_component	large ribosomal subunit
n	0022625	cellular_component	cytosolic large ribosomal subunit
n	0043232	cellular_component	intracellular non-membrane-bounded organelle
n	1990904	cellular_component	ribonucleoprotein complex
o	0002181	biological_process	cytoplasmic translation
o	0003735	molecular_function	structural constituent of ribosome
o	0005737	cellular_component	cytoplasm
o	0005829	cellular_component	cytosol
o	0005840	cellular_component	ribosome
o	0006412	biological_process	translation
o	0022625	cellular_component	cytosolic large ribosomal subunit
o	1990904	cellular_component	ribonucleoprotein complex
p	0002181	biological_process	cytoplasmic translation
p	0003723	molecular_function	RNA binding
p	0003735	molecular_function	structural constituent of ribosome
p	0005737	cellular_component	cytoplasm
p	0005829	cellular_component	cytosol
p	0005840	cellular_component	ribosome
p	0006364	biological_process	rRNA processing
p	0022625	cellular_component	cytosolic large ribosomal subunit
p	0030627	molecular_function	pre-mRNA 5'-splice site binding
p	0048025	biological_process	negative regulation of mRNA splicing, via spliceosome
p	1990904	cellular_component	ribonucleoprotein complex
q	0002181	biological_process	cytoplasmic translation
q	0003735	molecular_function	structural constituent of ribosome
q	0005737	cellular_component	cytoplasm
q	0005829	cellular_component	cytosol
q	0005840	cellular_component	ribosome
q	0006412	biological_process	translation
q	0006450	biological_process	regulation of translational fidelity
q	0022625	cellular_component	cytosolic large ribosomal subunit
q	1990904	cellular_component	ribonucleoprotein complex
r	0002181	biological_process	cytoplasmic translation
r	0003735	molecular_function	structural constituent of ribosome
r	0005737	cellular_component	cytoplasm
r	0005829	cellular_component	cytosol
r	0005840	cellular_component	ribosome
r	0006412	biological_process	translation
r	0022625	cellular_component	cytosolic large ribosomal subunit
r	1990904	cellular_component	ribonucleoprotein complex
s	0002181	biological_process	cytoplasmic translation
s	0003735	molecular_function	structural constituent of ribosome
s	0005737	cellular_component	cytoplasm
s	0005829	cellular_component	cytosol
s	0005840	cellular_component	ribosome
s	0006412	biological_process	translation
s	0022625	cellular_component	cytosolic large ribosomal subunit
s	0042273	biological_process	ribosomal large subunit biogenesis
s	1990904	cellular_component	ribonucleoprotein complex
t	0002181	biological_process	cytoplasmic translation
t	0003735	molecular_function	structural constituent of ribosome
t	0005737	cellular_component	cytoplasm
t	0005829	cellular_component	cytosol
t	0005840	cellular_component	ribosome
t	0006412	biological_process	translation
t	0022625	cellular_component	cytosolic large ribosomal subunit
t	0030687	cellular_component	preribosome, large subunit precursor
t	0042254	biological_process	ribosome biogenesis
t	1990904	cellular_component	ribonucleoprotein complex
u	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
u	0002181	biological_process	cytoplasmic translation
u	0003729	molecular_function	mRNA binding
u	0003735	molecular_function	structural constituent of ribosome
u	0005737	cellular_component	cytoplasm
u	0005829	cellular_component	cytosol
u	0005840	cellular_component	ribosome
u	0006412	biological_process	translation
u	0022625	cellular_component	cytosolic large ribosomal subunit
u	0030687	cellular_component	preribosome, large subunit precursor
u	1990904	cellular_component	ribonucleoprotein complex
v	0002181	biological_process	cytoplasmic translation
v	0003723	molecular_function	RNA binding
v	0003735	molecular_function	structural constituent of ribosome
v	0005737	cellular_component	cytoplasm
v	0005829	cellular_component	cytosol
v	0005840	cellular_component	ribosome
v	0006412	biological_process	translation
v	0022625	cellular_component	cytosolic large ribosomal subunit
v	1990904	cellular_component	ribonucleoprotein complex
w	0000448	biological_process	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
w	0002181	biological_process	cytoplasmic translation
w	0003723	molecular_function	RNA binding
w	0003735	molecular_function	structural constituent of ribosome
w	0005737	cellular_component	cytoplasm
w	0005829	cellular_component	cytosol
w	0005840	cellular_component	ribosome
w	0006412	biological_process	translation
w	0008270	molecular_function	zinc ion binding
w	0019843	molecular_function	rRNA binding
w	0022625	cellular_component	cytosolic large ribosomal subunit
w	0030687	cellular_component	preribosome, large subunit precursor
w	0044391	cellular_component	ribosomal subunit
w	0046872	molecular_function	metal ion binding
w	1990904	cellular_component	ribonucleoprotein complex
x	0002181	biological_process	cytoplasmic translation
x	0003735	molecular_function	structural constituent of ribosome
x	0005737	cellular_component	cytoplasm
x	0005829	cellular_component	cytosol
x	0005840	cellular_component	ribosome
x	0006412	biological_process	translation
x	0022618	biological_process	protein-RNA complex assembly
x	0022625	cellular_component	cytosolic large ribosomal subunit
x	1990904	cellular_component	ribonucleoprotein complex
y	0002181	biological_process	cytoplasmic translation
y	0003735	molecular_function	structural constituent of ribosome
y	0005515	molecular_function	protein binding
y	0005737	cellular_component	cytoplasm
y	0005829	cellular_component	cytosol
y	0005840	cellular_component	ribosome
y	0006412	biological_process	translation
y	0022625	cellular_component	cytosolic large ribosomal subunit
y	1990904	cellular_component	ribonucleoprotein complex
z	0000027	biological_process	ribosomal large subunit assembly
z	0000055	biological_process	ribosomal large subunit export from nucleus
z	0002181	biological_process	cytoplasmic translation
z	0003735	molecular_function	structural constituent of ribosome
z	0005634	cellular_component	nucleus
z	0005737	cellular_component	cytoplasm
z	0005829	cellular_component	cytosol
z	0005840	cellular_component	ribosome
z	0006412	biological_process	translation
z	0008270	molecular_function	zinc ion binding
z	0016567	biological_process	protein ubiquitination
z	0019941	biological_process	modification-dependent protein catabolic process
z	0022625	cellular_component	cytosolic large ribosomal subunit
z	0031386	molecular_function	protein tag activity
z	0031625	molecular_function	ubiquitin protein ligase binding
z	0042254	biological_process	ribosome biogenesis
z	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PDB Data

site_id	AC1
Number of Residues	3
Details	binding site for residue MG A 3402

Chain	Residue
A	A39
A	G41
A	C42

---

site_id	AC2
Number of Residues	3
Details	binding site for residue MG A 3403

Chain	Residue
A	G41
A	C42
A	G2412

---

site_id	AC3
Number of Residues	1
Details	binding site for residue MG A 3404

Chain	Residue
A	A49

---

site_id	AC4
Number of Residues	1
Details	binding site for residue MG A 3405

Chain	Residue
A	A52

---

site_id	AC5
Number of Residues	1
Details	binding site for residue MG A 3407

Chain	Residue
A	A62

---

site_id	AC6
Number of Residues	2
Details	binding site for residue MG A 3409

Chain	Residue
A	A77
A	U78

---

site_id	AC7
Number of Residues	2
Details	binding site for residue MG A 3410

Chain	Residue
A	A325
A	U326

---

site_id	AC8
Number of Residues	1
Details	binding site for residue MG A 3411

Chain	Residue
A	C340

---

site_id	AC9
Number of Residues	2
Details	binding site for residue MG A 3412

Chain	Residue
A	G345
A	A348

---

site_id	AD1
Number of Residues	1
Details	binding site for residue MG A 3413

Chain	Residue
A	A504

---

site_id	AD2
Number of Residues	1
Details	binding site for residue MG A 3414

Chain	Residue
A	G658

---

site_id	AD3
Number of Residues	2
Details	binding site for residue MG A 3415

Chain	Residue
A	G726
A	G742

---

site_id	AD4
Number of Residues	1
Details	binding site for residue MG A 3416

Chain	Residue
A	C804

---

site_id	AD5
Number of Residues	3
Details	binding site for residue MG A 3417

Chain	Residue
A	C861
A	U862
A	C893

---

site_id	AD6
Number of Residues	2
Details	binding site for residue MG A 3418

Chain	Residue
A	C863
A	C893

---

site_id	AD7
Number of Residues	2
Details	binding site for residue MG A 3419

Chain	Residue
A	G875
A	U2949

---

site_id	AD8
Number of Residues	2
Details	binding site for residue MG A 3420

Chain	Residue
A	U874
A	G875

---

site_id	AD9
Number of Residues	2
Details	binding site for residue MG A 3421

Chain	Residue
A	A883
A	C1846

---

site_id	AE1
Number of Residues	4
Details	binding site for residue MG A 3422

Chain	Residue
A	A915
A	G916
A	A2958
D	ASN205

---

site_id	AE2
Number of Residues	3
Details	binding site for residue MG A 3423

Chain	Residue
A	G916
A	G2957
A	A2958

---

site_id	AE3
Number of Residues	2
Details	binding site for residue MG A 3424

Chain	Residue
A	U919
A	U922

---

site_id	AE4
Number of Residues	1
Details	binding site for residue MG A 3425

Chain	Residue
A	U939

---

site_id	AE5
Number of Residues	2
Details	binding site for residue MG A 3426

Chain	Residue
A	U942
A	G1434

---

site_id	AE6
Number of Residues	2
Details	binding site for residue MG A 3427

Chain	Residue
A	A1366
A	G1367

---

site_id	AE7
Number of Residues	2
Details	binding site for residue MG A 3428

Chain	Residue
A	G950
A	G1367

---

site_id	AE8
Number of Residues	1
Details	binding site for residue MG A 3429

Chain	Residue
A	C961

---

site_id	AE9
Number of Residues	1
Details	binding site for residue MG A 3430

Chain	Residue
A	G963

---

site_id	AF1
Number of Residues	2
Details	binding site for residue MG A 3431

Chain	Residue
A	U990
A	G991

---

site_id	AF2
Number of Residues	1
Details	binding site for residue MG A 3432

Chain	Residue
A	U995

---

site_id	AF3
Number of Residues	1
Details	binding site for residue MG A 3433

Chain	Residue
A	U995

---

site_id	AF4
Number of Residues	3
Details	binding site for residue MG A 3434

Chain	Residue
A	G1115
A	G1116
A	G1117

---

site_id	AF5
Number of Residues	2
Details	binding site for residue MG A 3435

Chain	Residue
A	A1133
A	C2867

---

site_id	AF6
Number of Residues	1
Details	binding site for residue MG A 3436

Chain	Residue
A	C1141

---

site_id	AF7
Number of Residues	1
Details	binding site for residue MG A 3437

Chain	Residue
A	A1143

---

site_id	AF8
Number of Residues	2
Details	binding site for residue MG A 3440

Chain	Residue
A	A1150
A	U1151

---

site_id	AF9
Number of Residues	3
Details	binding site for residue MG A 3441

Chain	Residue
A	A1169
A	A1170
I	PRO217

---

site_id	AG1
Number of Residues	1
Details	binding site for residue MG A 3442

Chain	Residue
A	C1298

---

site_id	AG2
Number of Residues	1
Details	binding site for residue MG A 3444

Chain	Residue
A	A1369

---

site_id	AG3
Number of Residues	2
Details	binding site for residue MG A 3445

Chain	Residue
A	G1392
A	A1393

---

site_id	AG4
Number of Residues	2
Details	binding site for residue MG A 3446

Chain	Residue
A	A396
A	G1417

---

site_id	AG5
Number of Residues	1
Details	binding site for residue MG A 3447

Chain	Residue
A	G1434

---

site_id	AG6
Number of Residues	3
Details	binding site for residue MG A 3448

Chain	Residue
A	U1448
A	A1449
A	U2349

---

site_id	AG7
Number of Residues	2
Details	binding site for residue MG A 3449

Chain	Residue
A	A1449
A	G1450

---

site_id	AG8
Number of Residues	2
Details	binding site for residue MG A 3450

Chain	Residue
A	C1478
A	U1871

---

site_id	AG9
Number of Residues	2
Details	binding site for residue MG A 3451

Chain	Residue
A	G1488
A	U1837

---

site_id	AH1
Number of Residues	2
Details	binding site for residue MG A 3452

Chain	Residue
A	C1508
A	A1509

---

site_id	AH2
Number of Residues	2
Details	binding site for residue MG A 3453

Chain	Residue
A	C1532
A	G1586

---

site_id	AH3
Number of Residues	2
Details	binding site for residue MG A 3454

Chain	Residue
A	G1590
A	G1592

---

site_id	AH4
Number of Residues	3
Details	binding site for residue MG A 3455

Chain	Residue
A	A1605
A	A1835
A	C1836

---

site_id	AH5
Number of Residues	1
Details	binding site for residue MG A 3456

Chain	Residue
A	A1867

---

site_id	AH6
Number of Residues	2
Details	binding site for residue MG A 3457

Chain	Residue
A	A1481
A	A1867

---

site_id	AH7
Number of Residues	4
Details	binding site for residue MG A 3458

Chain	Residue
A	A1901
A	G1902
A	U1903
A	A2919

---

site_id	AH8
Number of Residues	2
Details	binding site for residue MG A 3459

Chain	Residue
A	U1903
A	G1902

---

site_id	AH9
Number of Residues	3
Details	binding site for residue MG A 3460

Chain	Residue
A	A2138
A	U2140
A	U2141

---

site_id	AI1
Number of Residues	3
Details	binding site for residue MG A 3461

Chain	Residue
A	U871
A	U2141
A	A2142

---

site_id	AI2
Number of Residues	1
Details	binding site for residue MG A 3462

Chain	Residue
A	C2146

---

site_id	AI3
Number of Residues	2
Details	binding site for residue MG A 3463

Chain	Residue
A	G2964
A	G2966

---

site_id	AI4
Number of Residues	1
Details	binding site for residue MG A 3464

Chain	Residue
A	A2279

---

site_id	AI5
Number of Residues	2
Details	binding site for residue MG A 3465

Chain	Residue
A	A2243
A	A2313

---

site_id	AI6
Number of Residues	1
Details	binding site for residue MG A 3466

Chain	Residue
A	A2320

---

site_id	AI7
Number of Residues	2
Details	binding site for residue MG A 3467

Chain	Residue
A	C2329
A	U2920

---

site_id	AI8
Number of Residues	2
Details	binding site for residue MG A 3468

Chain	Residue
A	G652
A	A653

---

site_id	AI9
Number of Residues	1
Details	binding site for residue MG A 3469

Chain	Residue
A	A2367

---

site_id	AJ1
Number of Residues	2
Details	binding site for residue MG A 3470

Chain	Residue
A	G635
A	U2379

---

site_id	AJ2
Number of Residues	2
Details	binding site for residue MG A 3471

Chain	Residue
A	A2399
A	G2874

---

site_id	AJ3
Number of Residues	2
Details	binding site for residue MG A 3472

Chain	Residue
A	C2616
A	U2617

---

site_id	AJ4
Number of Residues	1
Details	binding site for residue MG A 3473

Chain	Residue
A	A2413

---

site_id	AJ5
Number of Residues	2
Details	binding site for residue MG A 3474

Chain	Residue
A	U2416
A	G2607

---

site_id	AJ6
Number of Residues	1
Details	binding site for residue MG A 3475

Chain	Residue
A	G2639

---

site_id	AJ7
Number of Residues	3
Details	binding site for residue MG A 3476

Chain	Residue
A	G2658
A	G2659
A	C2755

---

site_id	AJ8
Number of Residues	3
Details	binding site for residue MG A 3477

Chain	Residue
A	G644
A	A2817
A	U2868

---

site_id	AJ9
Number of Residues	5
Details	binding site for residue MG A 3478

Chain	Residue
A	G2816
A	A2817
A	U2866
A	C2867
A	U2868

---

site_id	AK1
Number of Residues	3
Details	binding site for residue MG A 3479

Chain	Residue
A	G2403
A	C2870
A	G2871

---

site_id	AK2
Number of Residues	3
Details	binding site for residue MG A 3480

Chain	Residue
A	A2398
A	U2873
A	G2874

---

site_id	AK3
Number of Residues	1
Details	binding site for residue MG A 3481

Chain	Residue
A	A2887

---

site_id	AK4
Number of Residues	3
Details	binding site for residue MG A 3482

Chain	Residue
A	C2942
A	G2943
A	U2944

---

site_id	AK5
Number of Residues	3
Details	binding site for residue MG A 3483

Chain	Residue
A	U2944
A	G2945
A	A2946

---

site_id	AK6
Number of Residues	1
Details	binding site for residue MG A 3484

Chain	Residue
A	A2956

---

site_id	AK7
Number of Residues	2
Details	binding site for residue K A 3485

Chain	Residue
A	A409
A	U410

---

site_id	AK8
Number of Residues	4
Details	binding site for residue K A 3486

Chain	Residue
A	A816
A	A817
A	C818
A	U819

---

site_id	AK9
Number of Residues	2
Details	binding site for residue K A 3487

Chain	Residue
A	A806
A	G934

---

site_id	AL1
Number of Residues	2
Details	binding site for residue MG C 201

Chain	Residue
C	C19
C	U20

---

site_id	AL2
Number of Residues	1
Details	binding site for residue MG i 201

Chain	Residue
i	ASN47

---

Functional Information from PROSITE/UniProt

site_id	PS00051
Number of Residues	17
Details	RIBOSOMAL_L39E Ribosomal protein L39e signature. RTnntIryNakrRNWRR

Chain	Residue	Details
y	ARG30-ARG46

---

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. FeqnemiDaiAvTkGHGfeGvthR

Chain	Residue	Details
E	PHE209-ARG232

---

site_id	PS00050
Number of Residues	16
Details	RIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVRLTadydaldI

Chain	Residue	Details
k	LYS120-ILE135

---

site_id	PS00299
Number of Residues	26
Details	UBIQUITIN_1 Ubiquitin domain signature. KskIqDkegIPpdqQrLIFaGkqleD

Chain	Residue	Details
z	LYS27-ASP52

---

site_id	PS01106
Number of Residues	18
Details	RIBOSOMAL_L18E Ribosomal protein L18e signature. KaLflSKinRPpVSVsRI

Chain	Residue	Details
d	LYS50-ILE67

---

site_id	PS01194
Number of Residues	24
Details	RIBOSOMAL_L15E Ribosomal protein L15e signature. DKARrLGYkAkqGFVIYRvRVrRG

Chain	Residue	Details
a	ASP46-GLY69

---

site_id	PS00700
Number of Residues	22
Details	RIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QicrVrnKdiRkFlDGIYVshK

Chain	Residue	Details
K	GLN163-LYS184

---

site_id	PS01104
Number of Residues	15
Details	RIBOSOMAL_L13E Ribosomal protein L13e signature. RaGRGFTLaEVkaaG

Chain	Residue	Details
N	ARG70-GLY84

---

site_id	PS01082
Number of Residues	18
Details	RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CkkmgVPYaiVkGKarLG

Chain	Residue	Details
J	CYS170-GLY187

---

site_id	PS00526
Number of Residues	20
Details	RIBOSOMAL_L19E Ribosomal protein L19e signature. QKRLaAsvvgVGkrkVWLDP

Chain	Residue	Details
e	GLN7-PRO26

---

site_id	PS00634
Number of Residues	33
Details	RIBOSOMAL_L30 Ribosomal protein L30 signature. VLqlLrLtRinSgTfvkvtkatleLLklIepYV

Chain	Residue	Details
I	VAL102-VAL134

---

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. AIVVrqakswrrr.DGvflyFedNagVI

Chain	Residue	Details
i	ALA76-ILE102

---

site_id	PS01145
Number of Residues	14
Details	RIBOSOMAL_L34E Ribosomal protein L34e signature. TrSnKikvvKTPGG

Chain	Residue	Details
t	THR15-GLY28

---

site_id	PS00783
Number of Residues	24
Details	RIBOSOMAL_L13 Ribosomal protein L13 signature. LRGMVShktarGKaalerLkVFeG

Chain	Residue	Details
b	LEU84-GLY107

---

site_id	PS01077
Number of Residues	20
Details	RIBOSOMAL_L37E Ribosomal protein L37e signature. GTpSfGkRhnks.HtlCnRCG

Chain	Residue	Details
w	GLY4-GLY23

---

site_id	PS01190
Number of Residues	11
Details	RIBOSOMAL_L36E Ribosomal protein L36e signature. PYERRlIDLIR

Chain	Residue	Details
v	PRO52-ARG62

---

site_id	PS01257
Number of Residues	22
Details	RIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqqGMRgAWGKPhGlaARV

Chain	Residue	Details
L	ALA108-VAL129

---

site_id	PS00464
Number of Residues	25
Details	RIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRinkyesspSHIELvV

Chain	Residue	Details
c	ARG126-VAL150

---

site_id	PS00709
Number of Residues	25
Details	RIBOSOMAL_L30E_1 Ribosomal protein L30e signature 1. SgkytlGyKstVKslRqGksKlIII

Chain	Residue	Details
p	SER20-ILE44

---

site_id	PS00993
Number of Residues	21
Details	RIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. ELGTavGKlfrvgvVsIlEaG

Chain	Residue	Details
p	GLU76-GLY96

---

site_id	PS00579
Number of Residues	15
Details	RIBOSOMAL_L29 Ribosomal protein L29 signature. SLPKIKtVRKSIACV

Chain	Residue	Details
u	SER40-VAL54

---

site_id	PS00475
Number of Residues	32
Details	RIBOSOMAL_L15 Ribosomal protein L15 signature. KILGkGrIpnvp.ViVkarfVSklAeekIraaG

Chain	Residue	Details
n	LYS111-GLY142

---

site_id	PS01073
Number of Residues	18
Details	RIBOSOMAL_L24E Ribosomal protein L24e signature. FsGakIyPGrGtlFvRgD

Chain	Residue	Details
j	PHE8-ASP25

---

site_id	PS00580
Number of Residues	21
Details	RIBOSOMAL_L32E Ribosomal protein L32e signature. FkRhhsdRyhRVaen..WRKqkG

Chain	Residue	Details
r	PHE17-GLY37

---

site_id	PS01107
Number of Residues	12
Details	RIBOSOMAL_L27E Ribosomal protein L27e signature. GKNqWFFskLRF

Chain	Residue	Details
m	GLY125-PHE136

---

site_id	PS01170
Number of Residues	19
Details	RIBOSOMAL_L6E Ribosomal protein L6e signature. NgvPLRRvnarYVIATSt.K

Chain	Residue	Details
H	ASN72-LYS90

---

site_id	PS00467
Number of Residues	12
Details	RIBOSOMAL_L2 Ribosomal protein L2 signature. PktRGVAmNPvD

Chain	Residue	Details
D	PRO197-ASP208

---

site_id	PS01037
Number of Residues	18
Details	SBP_BACTERIAL_1 Bacterial extracellular solute-binding proteins, family 1 signature. PIAvEalSLIYNkdlLpN

Chain	Residue	Details
V	PRO-291-ASN-274

---

site_id	PS01172
Number of Residues	12
Details	RIBOSOMAL_L44E Ribosomal protein L44e signature. KtTKKvvLRleC

Chain	Residue	Details
Q	LYS63-CYS74

---

site_id	PS01105
Number of Residues	22
Details	RIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GKVtRtHGnsGvVrAtFrnnLP

Chain	Residue	Details
s	GLY69-PRO90

---

site_id	PS01108
Number of Residues	18
Details	RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeVlVVrGskKGqe.GkI

Chain	Residue	Details
l	ASP53-ILE70

---

site_id	PS01144
Number of Residues	15
Details	RIBOSOMAL_L31E Ribosomal protein L31e signature. VRLApeLNqAiWkRG

Chain	Residue	Details
q	VAL49-GLY63

---

site_id	PS00358
Number of Residues	17
Details	RIBOSOMAL_L5 Ribosomal protein L5 signature. LeqLSGQtpVqSkARyT

Chain	Residue	Details
M	LEU37-THR53

---

site_id	PS01171
Number of Residues	26
Details	RIBOSOMAL_L21E Ribosomal protein L21e signature. GDiVdikangsiqk.GmpHkfYqGkTG

Chain	Residue	Details
g	GLY37-GLY62

---

site_id	PS00939
Number of Residues	27
Details	RIBOSOMAL_L1E Ribosomal protein L1e signature. NhneKryATaSAIaATAvaslvlaRGH

Chain	Residue	Details
F	ASN114-HIS140

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047

Chain	Residue	Details
p	LYS22
e	SER37
p	LYS53
p	LYS83

---

site_id	SWS_FT_FI2
Number of Residues	2
Details	MOD_RES: N6,N6-dimethyllysine; by RKM1 => ECO:0000269|PubMed:17327221

Chain	Residue	Details
i	LYS106
i	LYS110
f	LYS131
f	LYS149
e	LYS146
e	LYS186

---

site_id	SWS_FT_FI3
Number of Residues	3
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047

Chain	Residue	Details
L	LYS40
L	LYS101
D	LYS119
D	LYS145

---

site_id	SWS_FT_FI4
Number of Residues	1
Details	MOD_RES: Phosphoserine => ECO:0007744|PubMed:19779198

Chain	Residue	Details
E	SER297

---

site_id	SWS_FT_FI5
Number of Residues	3
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047

Chain	Residue	Details
E	LYS39
E	LYS136

---