5SZD
Crystal structure of Aquifex aeolicus Hfq at 1.5A
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003723 | molecular_function | RNA binding |
A | 0005829 | cellular_component | cytosol |
A | 0006355 | biological_process | regulation of DNA-templated transcription |
A | 0043487 | biological_process | regulation of RNA stability |
A | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
B | 0003723 | molecular_function | RNA binding |
B | 0005829 | cellular_component | cytosol |
B | 0006355 | biological_process | regulation of DNA-templated transcription |
B | 0043487 | biological_process | regulation of RNA stability |
B | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
C | 0003723 | molecular_function | RNA binding |
C | 0005829 | cellular_component | cytosol |
C | 0006355 | biological_process | regulation of DNA-templated transcription |
C | 0043487 | biological_process | regulation of RNA stability |
C | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
D | 0003723 | molecular_function | RNA binding |
D | 0005829 | cellular_component | cytosol |
D | 0006355 | biological_process | regulation of DNA-templated transcription |
D | 0043487 | biological_process | regulation of RNA stability |
D | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
E | 0003723 | molecular_function | RNA binding |
E | 0005829 | cellular_component | cytosol |
E | 0006355 | biological_process | regulation of DNA-templated transcription |
E | 0043487 | biological_process | regulation of RNA stability |
E | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
F | 0003723 | molecular_function | RNA binding |
F | 0005829 | cellular_component | cytosol |
F | 0006355 | biological_process | regulation of DNA-templated transcription |
F | 0043487 | biological_process | regulation of RNA stability |
F | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
G | 0003723 | molecular_function | RNA binding |
G | 0005829 | cellular_component | cytosol |
G | 0006355 | biological_process | regulation of DNA-templated transcription |
G | 0043487 | biological_process | regulation of RNA stability |
G | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
H | 0003723 | molecular_function | RNA binding |
H | 0005829 | cellular_component | cytosol |
H | 0006355 | biological_process | regulation of DNA-templated transcription |
H | 0043487 | biological_process | regulation of RNA stability |
H | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
I | 0003723 | molecular_function | RNA binding |
I | 0005829 | cellular_component | cytosol |
I | 0006355 | biological_process | regulation of DNA-templated transcription |
I | 0043487 | biological_process | regulation of RNA stability |
I | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
J | 0003723 | molecular_function | RNA binding |
J | 0005829 | cellular_component | cytosol |
J | 0006355 | biological_process | regulation of DNA-templated transcription |
J | 0043487 | biological_process | regulation of RNA stability |
J | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
K | 0003723 | molecular_function | RNA binding |
K | 0005829 | cellular_component | cytosol |
K | 0006355 | biological_process | regulation of DNA-templated transcription |
K | 0043487 | biological_process | regulation of RNA stability |
K | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
L | 0003723 | molecular_function | RNA binding |
L | 0005829 | cellular_component | cytosol |
L | 0006355 | biological_process | regulation of DNA-templated transcription |
L | 0043487 | biological_process | regulation of RNA stability |
L | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | binding site for residue MRD A 101 |
Chain | Residue |
A | PHE43 |
A | TYR57 |
A | HIS59 |
A | HOH215 |
B | GLN9 |
B | LEU42 |
site_id | AC2 |
Number of Residues | 7 |
Details | binding site for residue MRD A 102 |
Chain | Residue |
F | PHE40 |
F | ASP41 |
F | LEU42 |
F | LYS58 |
A | HIS3 |
F | GLN9 |
F | GLU10 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue MPD A 103 |
Chain | Residue |
A | GLN9 |
A | PHE40 |
A | ASP41 |
A | LEU42 |
A | LYS58 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue GAI A 104 |
Chain | Residue |
A | ASN29 |
A | GLY30 |
I | LEU42 |
J | TYR6 |
site_id | AC5 |
Number of Residues | 1 |
Details | binding site for residue GAI A 105 |
Chain | Residue |
A | TYR6 |
site_id | AC6 |
Number of Residues | 6 |
Details | binding site for residue MRD B 101 |
Chain | Residue |
B | PHE43 |
B | TYR57 |
B | HIS59 |
B | HOH219 |
C | GLN9 |
C | LEU42 |
site_id | AC7 |
Number of Residues | 7 |
Details | binding site for residue MPD B 102 |
Chain | Residue |
B | GLN9 |
B | GLU10 |
B | PHE40 |
B | ASP41 |
B | LEU42 |
B | LYS58 |
C | PRO5 |
site_id | AC8 |
Number of Residues | 3 |
Details | binding site for residue GAI B 103 |
Chain | Residue |
B | ASN29 |
B | GLY30 |
K | TYR6 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue MRD C 101 |
Chain | Residue |
C | PHE43 |
C | TYR57 |
C | HIS59 |
C | HOH218 |
D | GLN9 |
D | LEU42 |
site_id | AD1 |
Number of Residues | 6 |
Details | binding site for residue MPD C 102 |
Chain | Residue |
C | GLN9 |
C | GLU10 |
C | PHE40 |
C | ASP41 |
C | LEU42 |
C | LYS58 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue GAI C 103 |
Chain | Residue |
C | ASN29 |
C | GLY30 |
K | LEU42 |
L | TYR6 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue MRD D 101 |
Chain | Residue |
D | PHE43 |
D | TYR57 |
D | HIS59 |
D | HOH213 |
E | GLN9 |
E | LEU42 |
site_id | AD4 |
Number of Residues | 6 |
Details | binding site for residue MPD D 102 |
Chain | Residue |
D | GLN9 |
D | GLU10 |
D | PHE40 |
D | ASP41 |
D | LEU42 |
D | LYS58 |
site_id | AD5 |
Number of Residues | 6 |
Details | binding site for residue MRD E 101 |
Chain | Residue |
E | PHE43 |
E | TYR57 |
E | HIS59 |
E | HOH216 |
F | GLN9 |
F | LEU42 |
site_id | AD6 |
Number of Residues | 7 |
Details | binding site for residue MPD E 102 |
Chain | Residue |
E | GLN9 |
E | GLU10 |
E | PHE40 |
E | ASP41 |
E | LEU42 |
E | LYS58 |
E | HOH207 |
site_id | AD7 |
Number of Residues | 4 |
Details | binding site for residue GAI E 103 |
Chain | Residue |
E | ASN29 |
E | GLY30 |
E | HOH222 |
H | TYR6 |
site_id | AD8 |
Number of Residues | 6 |
Details | binding site for residue MRD F 101 |
Chain | Residue |
A | GLN9 |
A | LEU42 |
F | PHE43 |
F | TYR57 |
F | HIS59 |
F | HOH216 |
site_id | AD9 |
Number of Residues | 5 |
Details | binding site for residue CL F 102 |
Chain | Residue |
F | MET4 |
F | PRO5 |
F | TYR6 |
F | LYS7 |
F | HOH201 |
site_id | AE1 |
Number of Residues | 5 |
Details | binding site for residue GAI F 103 |
Chain | Residue |
I | TYR6 |
F | ASN29 |
F | GLY30 |
F | HOH206 |
H | LEU42 |
site_id | AE2 |
Number of Residues | 6 |
Details | binding site for residue MRD G 101 |
Chain | Residue |
G | PHE43 |
G | TYR57 |
G | HIS59 |
G | HOH216 |
H | GLN9 |
H | LEU42 |
site_id | AE3 |
Number of Residues | 5 |
Details | binding site for residue MPD G 102 |
Chain | Residue |
G | GLN9 |
G | PHE40 |
G | ASP41 |
G | LYS58 |
G | HOH214 |
site_id | AE4 |
Number of Residues | 5 |
Details | binding site for residue CL G 103 |
Chain | Residue |
D | HOH207 |
D | HOH217 |
G | MET4 |
G | TYR6 |
G | HOH215 |
site_id | AE5 |
Number of Residues | 4 |
Details | binding site for residue GAI G 104 |
Chain | Residue |
D | ASN29 |
D | GLY30 |
D | HOH216 |
G | TYR6 |
site_id | AE6 |
Number of Residues | 7 |
Details | binding site for residue PEG G 105 |
Chain | Residue |
G | TYR26 |
G | LEU27 |
G | THR62 |
G | THR63 |
G | HOH208 |
L | ASN29 |
L | VAL31 |
site_id | AE7 |
Number of Residues | 6 |
Details | binding site for residue MRD H 101 |
Chain | Residue |
H | PHE43 |
H | TYR57 |
H | HIS59 |
H | HOH217 |
I | GLN9 |
I | LEU42 |
site_id | AE8 |
Number of Residues | 7 |
Details | binding site for residue MPD H 102 |
Chain | Residue |
H | GLN9 |
H | GLU10 |
H | PHE40 |
H | ASP41 |
H | LYS58 |
H | HOH221 |
I | SER2 |
site_id | AE9 |
Number of Residues | 3 |
Details | binding site for residue MPD H 103 |
Chain | Residue |
G | GLN52 |
H | TYR26 |
H | THR63 |
site_id | AF1 |
Number of Residues | 5 |
Details | binding site for residue CL H 104 |
Chain | Residue |
E | HOH210 |
E | HOH214 |
H | MET4 |
H | TYR6 |
H | HOH202 |
site_id | AF2 |
Number of Residues | 2 |
Details | binding site for residue GAI H 105 |
Chain | Residue |
H | TYR26 |
H | GLY30 |
site_id | AF3 |
Number of Residues | 6 |
Details | binding site for residue MRD I 101 |
Chain | Residue |
I | PHE43 |
I | TYR57 |
I | HIS59 |
I | HOH216 |
J | GLN9 |
J | LEU42 |
site_id | AF4 |
Number of Residues | 7 |
Details | binding site for residue MPD I 102 |
Chain | Residue |
I | GLN9 |
I | PHE40 |
I | ASP41 |
I | LEU42 |
I | LYS58 |
I | HOH214 |
J | SER2 |
site_id | AF5 |
Number of Residues | 5 |
Details | binding site for residue CL I 103 |
Chain | Residue |
F | HOH208 |
F | HOH214 |
I | MET4 |
I | TYR6 |
I | HOH209 |
site_id | AF6 |
Number of Residues | 6 |
Details | binding site for residue MRD J 101 |
Chain | Residue |
J | PHE43 |
J | TYR57 |
J | HIS59 |
J | HOH216 |
K | GLN9 |
K | LEU42 |
site_id | AF7 |
Number of Residues | 6 |
Details | binding site for residue MPD J 102 |
Chain | Residue |
J | GLN9 |
J | PHE40 |
J | ASP41 |
J | LYS58 |
J | HOH214 |
K | SER2 |
site_id | AF8 |
Number of Residues | 6 |
Details | binding site for residue CL J 103 |
Chain | Residue |
A | HOH207 |
A | HOH214 |
J | MET4 |
J | TYR6 |
J | LYS7 |
J | HOH206 |
site_id | AF9 |
Number of Residues | 6 |
Details | binding site for residue PEG J 104 |
Chain | Residue |
I | ASN29 |
J | TYR26 |
J | LEU27 |
J | THR62 |
J | THR63 |
J | HOH201 |
site_id | AG1 |
Number of Residues | 6 |
Details | binding site for residue MRD K 101 |
Chain | Residue |
K | PHE43 |
K | TYR57 |
K | HIS59 |
K | HOH211 |
L | GLN9 |
L | LEU42 |
site_id | AG2 |
Number of Residues | 6 |
Details | binding site for residue MPD K 102 |
Chain | Residue |
K | GLN9 |
K | PHE40 |
K | ASP41 |
K | LYS58 |
K | HOH209 |
L | SER2 |
site_id | AG3 |
Number of Residues | 6 |
Details | binding site for residue CL K 103 |
Chain | Residue |
B | HOH213 |
B | HOH216 |
K | MET4 |
K | TYR6 |
K | LYS7 |
K | HOH207 |
site_id | AG4 |
Number of Residues | 8 |
Details | binding site for residue PEG K 104 |
Chain | Residue |
J | LEU27 |
J | ASN29 |
J | LEU33 |
K | LEU27 |
K | THR62 |
K | THR63 |
K | HOH201 |
K | HOH222 |
site_id | AG5 |
Number of Residues | 6 |
Details | binding site for residue MRD L 101 |
Chain | Residue |
G | GLN9 |
G | LEU42 |
L | PHE43 |
L | TYR57 |
L | HIS59 |
L | HOH222 |
site_id | AG6 |
Number of Residues | 7 |
Details | binding site for residue MPD L 102 |
Chain | Residue |
G | SER2 |
L | GLN9 |
L | PHE40 |
L | ASP41 |
L | LEU42 |
L | LYS58 |
L | HOH218 |
site_id | AG7 |
Number of Residues | 6 |
Details | binding site for residue CL L 103 |
Chain | Residue |
C | HOH207 |
C | HOH215 |
L | MET4 |
L | TYR6 |
L | LYS7 |
L | HOH213 |
site_id | AG8 |
Number of Residues | 9 |
Details | binding site for residue PEG L 104 |
Chain | Residue |
K | LEU27 |
K | ASN29 |
K | VAL31 |
L | TYR26 |
L | LEU27 |
L | THR62 |
L | THR63 |
L | HOH206 |
L | HOH208 |