5SZD
Crystal structure of Aquifex aeolicus Hfq at 1.5A
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003723 | molecular_function | RNA binding |
| A | 0005829 | cellular_component | cytosol |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| A | 0043487 | biological_process | regulation of RNA stability |
| A | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
| B | 0003723 | molecular_function | RNA binding |
| B | 0005829 | cellular_component | cytosol |
| B | 0006355 | biological_process | regulation of DNA-templated transcription |
| B | 0043487 | biological_process | regulation of RNA stability |
| B | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
| C | 0003723 | molecular_function | RNA binding |
| C | 0005829 | cellular_component | cytosol |
| C | 0006355 | biological_process | regulation of DNA-templated transcription |
| C | 0043487 | biological_process | regulation of RNA stability |
| C | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
| D | 0003723 | molecular_function | RNA binding |
| D | 0005829 | cellular_component | cytosol |
| D | 0006355 | biological_process | regulation of DNA-templated transcription |
| D | 0043487 | biological_process | regulation of RNA stability |
| D | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
| E | 0003723 | molecular_function | RNA binding |
| E | 0005829 | cellular_component | cytosol |
| E | 0006355 | biological_process | regulation of DNA-templated transcription |
| E | 0043487 | biological_process | regulation of RNA stability |
| E | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
| F | 0003723 | molecular_function | RNA binding |
| F | 0005829 | cellular_component | cytosol |
| F | 0006355 | biological_process | regulation of DNA-templated transcription |
| F | 0043487 | biological_process | regulation of RNA stability |
| F | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
| G | 0003723 | molecular_function | RNA binding |
| G | 0005829 | cellular_component | cytosol |
| G | 0006355 | biological_process | regulation of DNA-templated transcription |
| G | 0043487 | biological_process | regulation of RNA stability |
| G | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
| H | 0003723 | molecular_function | RNA binding |
| H | 0005829 | cellular_component | cytosol |
| H | 0006355 | biological_process | regulation of DNA-templated transcription |
| H | 0043487 | biological_process | regulation of RNA stability |
| H | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
| I | 0003723 | molecular_function | RNA binding |
| I | 0005829 | cellular_component | cytosol |
| I | 0006355 | biological_process | regulation of DNA-templated transcription |
| I | 0043487 | biological_process | regulation of RNA stability |
| I | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
| J | 0003723 | molecular_function | RNA binding |
| J | 0005829 | cellular_component | cytosol |
| J | 0006355 | biological_process | regulation of DNA-templated transcription |
| J | 0043487 | biological_process | regulation of RNA stability |
| J | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
| K | 0003723 | molecular_function | RNA binding |
| K | 0005829 | cellular_component | cytosol |
| K | 0006355 | biological_process | regulation of DNA-templated transcription |
| K | 0043487 | biological_process | regulation of RNA stability |
| K | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
| L | 0003723 | molecular_function | RNA binding |
| L | 0005829 | cellular_component | cytosol |
| L | 0006355 | biological_process | regulation of DNA-templated transcription |
| L | 0043487 | biological_process | regulation of RNA stability |
| L | 0045974 | biological_process | regulation of translation, ncRNA-mediated |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue MRD A 101 |
| Chain | Residue |
| A | PHE43 |
| A | TYR57 |
| A | HIS59 |
| A | HOH215 |
| B | GLN9 |
| B | LEU42 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | binding site for residue MRD A 102 |
| Chain | Residue |
| F | PHE40 |
| F | ASP41 |
| F | LEU42 |
| F | LYS58 |
| A | HIS3 |
| F | GLN9 |
| F | GLU10 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue MPD A 103 |
| Chain | Residue |
| A | GLN9 |
| A | PHE40 |
| A | ASP41 |
| A | LEU42 |
| A | LYS58 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | binding site for residue GAI A 104 |
| Chain | Residue |
| A | ASN29 |
| A | GLY30 |
| I | LEU42 |
| J | TYR6 |
| site_id | AC5 |
| Number of Residues | 1 |
| Details | binding site for residue GAI A 105 |
| Chain | Residue |
| A | TYR6 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | binding site for residue MRD B 101 |
| Chain | Residue |
| B | PHE43 |
| B | TYR57 |
| B | HIS59 |
| B | HOH219 |
| C | GLN9 |
| C | LEU42 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | binding site for residue MPD B 102 |
| Chain | Residue |
| B | GLN9 |
| B | GLU10 |
| B | PHE40 |
| B | ASP41 |
| B | LEU42 |
| B | LYS58 |
| C | PRO5 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | binding site for residue GAI B 103 |
| Chain | Residue |
| B | ASN29 |
| B | GLY30 |
| K | TYR6 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | binding site for residue MRD C 101 |
| Chain | Residue |
| C | PHE43 |
| C | TYR57 |
| C | HIS59 |
| C | HOH218 |
| D | GLN9 |
| D | LEU42 |
| site_id | AD1 |
| Number of Residues | 6 |
| Details | binding site for residue MPD C 102 |
| Chain | Residue |
| C | GLN9 |
| C | GLU10 |
| C | PHE40 |
| C | ASP41 |
| C | LEU42 |
| C | LYS58 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue GAI C 103 |
| Chain | Residue |
| C | ASN29 |
| C | GLY30 |
| K | LEU42 |
| L | TYR6 |
| site_id | AD3 |
| Number of Residues | 6 |
| Details | binding site for residue MRD D 101 |
| Chain | Residue |
| D | PHE43 |
| D | TYR57 |
| D | HIS59 |
| D | HOH213 |
| E | GLN9 |
| E | LEU42 |
| site_id | AD4 |
| Number of Residues | 6 |
| Details | binding site for residue MPD D 102 |
| Chain | Residue |
| D | GLN9 |
| D | GLU10 |
| D | PHE40 |
| D | ASP41 |
| D | LEU42 |
| D | LYS58 |
| site_id | AD5 |
| Number of Residues | 6 |
| Details | binding site for residue MRD E 101 |
| Chain | Residue |
| E | PHE43 |
| E | TYR57 |
| E | HIS59 |
| E | HOH216 |
| F | GLN9 |
| F | LEU42 |
| site_id | AD6 |
| Number of Residues | 7 |
| Details | binding site for residue MPD E 102 |
| Chain | Residue |
| E | GLN9 |
| E | GLU10 |
| E | PHE40 |
| E | ASP41 |
| E | LEU42 |
| E | LYS58 |
| E | HOH207 |
| site_id | AD7 |
| Number of Residues | 4 |
| Details | binding site for residue GAI E 103 |
| Chain | Residue |
| E | ASN29 |
| E | GLY30 |
| E | HOH222 |
| H | TYR6 |
| site_id | AD8 |
| Number of Residues | 6 |
| Details | binding site for residue MRD F 101 |
| Chain | Residue |
| A | GLN9 |
| A | LEU42 |
| F | PHE43 |
| F | TYR57 |
| F | HIS59 |
| F | HOH216 |
| site_id | AD9 |
| Number of Residues | 5 |
| Details | binding site for residue CL F 102 |
| Chain | Residue |
| F | MET4 |
| F | PRO5 |
| F | TYR6 |
| F | LYS7 |
| F | HOH201 |
| site_id | AE1 |
| Number of Residues | 5 |
| Details | binding site for residue GAI F 103 |
| Chain | Residue |
| I | TYR6 |
| F | ASN29 |
| F | GLY30 |
| F | HOH206 |
| H | LEU42 |
| site_id | AE2 |
| Number of Residues | 6 |
| Details | binding site for residue MRD G 101 |
| Chain | Residue |
| G | PHE43 |
| G | TYR57 |
| G | HIS59 |
| G | HOH216 |
| H | GLN9 |
| H | LEU42 |
| site_id | AE3 |
| Number of Residues | 5 |
| Details | binding site for residue MPD G 102 |
| Chain | Residue |
| G | GLN9 |
| G | PHE40 |
| G | ASP41 |
| G | LYS58 |
| G | HOH214 |
| site_id | AE4 |
| Number of Residues | 5 |
| Details | binding site for residue CL G 103 |
| Chain | Residue |
| D | HOH207 |
| D | HOH217 |
| G | MET4 |
| G | TYR6 |
| G | HOH215 |
| site_id | AE5 |
| Number of Residues | 4 |
| Details | binding site for residue GAI G 104 |
| Chain | Residue |
| D | ASN29 |
| D | GLY30 |
| D | HOH216 |
| G | TYR6 |
| site_id | AE6 |
| Number of Residues | 7 |
| Details | binding site for residue PEG G 105 |
| Chain | Residue |
| G | TYR26 |
| G | LEU27 |
| G | THR62 |
| G | THR63 |
| G | HOH208 |
| L | ASN29 |
| L | VAL31 |
| site_id | AE7 |
| Number of Residues | 6 |
| Details | binding site for residue MRD H 101 |
| Chain | Residue |
| H | PHE43 |
| H | TYR57 |
| H | HIS59 |
| H | HOH217 |
| I | GLN9 |
| I | LEU42 |
| site_id | AE8 |
| Number of Residues | 7 |
| Details | binding site for residue MPD H 102 |
| Chain | Residue |
| H | GLN9 |
| H | GLU10 |
| H | PHE40 |
| H | ASP41 |
| H | LYS58 |
| H | HOH221 |
| I | SER2 |
| site_id | AE9 |
| Number of Residues | 3 |
| Details | binding site for residue MPD H 103 |
| Chain | Residue |
| G | GLN52 |
| H | TYR26 |
| H | THR63 |
| site_id | AF1 |
| Number of Residues | 5 |
| Details | binding site for residue CL H 104 |
| Chain | Residue |
| E | HOH210 |
| E | HOH214 |
| H | MET4 |
| H | TYR6 |
| H | HOH202 |
| site_id | AF2 |
| Number of Residues | 2 |
| Details | binding site for residue GAI H 105 |
| Chain | Residue |
| H | TYR26 |
| H | GLY30 |
| site_id | AF3 |
| Number of Residues | 6 |
| Details | binding site for residue MRD I 101 |
| Chain | Residue |
| I | PHE43 |
| I | TYR57 |
| I | HIS59 |
| I | HOH216 |
| J | GLN9 |
| J | LEU42 |
| site_id | AF4 |
| Number of Residues | 7 |
| Details | binding site for residue MPD I 102 |
| Chain | Residue |
| I | GLN9 |
| I | PHE40 |
| I | ASP41 |
| I | LEU42 |
| I | LYS58 |
| I | HOH214 |
| J | SER2 |
| site_id | AF5 |
| Number of Residues | 5 |
| Details | binding site for residue CL I 103 |
| Chain | Residue |
| F | HOH208 |
| F | HOH214 |
| I | MET4 |
| I | TYR6 |
| I | HOH209 |
| site_id | AF6 |
| Number of Residues | 6 |
| Details | binding site for residue MRD J 101 |
| Chain | Residue |
| J | PHE43 |
| J | TYR57 |
| J | HIS59 |
| J | HOH216 |
| K | GLN9 |
| K | LEU42 |
| site_id | AF7 |
| Number of Residues | 6 |
| Details | binding site for residue MPD J 102 |
| Chain | Residue |
| J | GLN9 |
| J | PHE40 |
| J | ASP41 |
| J | LYS58 |
| J | HOH214 |
| K | SER2 |
| site_id | AF8 |
| Number of Residues | 6 |
| Details | binding site for residue CL J 103 |
| Chain | Residue |
| A | HOH207 |
| A | HOH214 |
| J | MET4 |
| J | TYR6 |
| J | LYS7 |
| J | HOH206 |
| site_id | AF9 |
| Number of Residues | 6 |
| Details | binding site for residue PEG J 104 |
| Chain | Residue |
| I | ASN29 |
| J | TYR26 |
| J | LEU27 |
| J | THR62 |
| J | THR63 |
| J | HOH201 |
| site_id | AG1 |
| Number of Residues | 6 |
| Details | binding site for residue MRD K 101 |
| Chain | Residue |
| K | PHE43 |
| K | TYR57 |
| K | HIS59 |
| K | HOH211 |
| L | GLN9 |
| L | LEU42 |
| site_id | AG2 |
| Number of Residues | 6 |
| Details | binding site for residue MPD K 102 |
| Chain | Residue |
| K | GLN9 |
| K | PHE40 |
| K | ASP41 |
| K | LYS58 |
| K | HOH209 |
| L | SER2 |
| site_id | AG3 |
| Number of Residues | 6 |
| Details | binding site for residue CL K 103 |
| Chain | Residue |
| B | HOH213 |
| B | HOH216 |
| K | MET4 |
| K | TYR6 |
| K | LYS7 |
| K | HOH207 |
| site_id | AG4 |
| Number of Residues | 8 |
| Details | binding site for residue PEG K 104 |
| Chain | Residue |
| J | LEU27 |
| J | ASN29 |
| J | LEU33 |
| K | LEU27 |
| K | THR62 |
| K | THR63 |
| K | HOH201 |
| K | HOH222 |
| site_id | AG5 |
| Number of Residues | 6 |
| Details | binding site for residue MRD L 101 |
| Chain | Residue |
| G | GLN9 |
| G | LEU42 |
| L | PHE43 |
| L | TYR57 |
| L | HIS59 |
| L | HOH222 |
| site_id | AG6 |
| Number of Residues | 7 |
| Details | binding site for residue MPD L 102 |
| Chain | Residue |
| G | SER2 |
| L | GLN9 |
| L | PHE40 |
| L | ASP41 |
| L | LEU42 |
| L | LYS58 |
| L | HOH218 |
| site_id | AG7 |
| Number of Residues | 6 |
| Details | binding site for residue CL L 103 |
| Chain | Residue |
| C | HOH207 |
| C | HOH215 |
| L | MET4 |
| L | TYR6 |
| L | LYS7 |
| L | HOH213 |
| site_id | AG8 |
| Number of Residues | 9 |
| Details | binding site for residue PEG L 104 |
| Chain | Residue |
| K | LEU27 |
| K | ASN29 |
| K | VAL31 |
| L | TYR26 |
| L | LEU27 |
| L | THR62 |
| L | THR63 |
| L | HOH206 |
| L | HOH208 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 720 |
| Details | Domain: {"description":"Sm","evidences":[{"source":"PROSITE-ProRule","id":"PRU01346","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
