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5R4T

PanDDA analysis group deposition -- Crystal Structure of HUMAN CLEAVAGE FACTOR IM in complex with SK-430

Functional Information from GO Data
ChainGOidnamespacecontents
A0003729molecular_functionmRNA binding
A0005849cellular_componentmRNA cleavage factor complex
A0031124biological_processmRNA 3'-end processing
B0003729molecular_functionmRNA binding
B0005849cellular_componentmRNA cleavage factor complex
B0031124biological_processmRNA 3'-end processing
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 301
ChainResidue
AMET76
ATRP149
AHIS171
AHOH521

site_idAC2
Number of Residues2
Detailsbinding site for residue ZN A 302
ChainResidue
AHIS89
BGLU200

site_idAC3
Number of Residues5
Detailsbinding site for residue ACT A 303
ChainResidue
AHIS171
AHOH417
AGLU34
AASN147
ATRP149

site_idAC4
Number of Residues5
Detailsbinding site for residue ACT A 304
ChainResidue
APHE199
AGLU200
ATYR202
AASP203
AASN204

site_idAC5
Number of Residues10
Detailsbinding site for residue RWG A 305
ChainResidue
AGLU55
ALYS56
ALEU97
ALYS105
ALEU106
AGLY108
AGLY109
AGLU110
AILE128
ATYR191

site_idAC6
Number of Residues7
Detailsbinding site for residue RWG A 306
ChainResidue
ATHR46
ATHR101
ATHR102
AASP133
AALA183
ALEU184
AHOH467

site_idAC7
Number of Residues5
Detailsbinding site for residue ZN B 301
ChainResidue
AHIS89
AHOH421
BGLU88
BHIS93
BHOH401

site_idAC8
Number of Residues6
Detailsbinding site for residue ZN B 302
ChainResidue
AGLU88
AHIS93
AHOH403
AHOH408
BHIS164
BHOH499

site_idAC9
Number of Residues3
Detailsbinding site for residue ZN B 303
ChainResidue
AALA195
AGLU200
AHOH468

site_idAD1
Number of Residues2
Detailsbinding site for residue ZN B 304
ChainResidue
BHIS171
BHOH505

site_idAD2
Number of Residues5
Detailsbinding site for residue ACT B 305
ChainResidue
AHIS164
BTYR160
BPHE199
BTYR202
BHOH426

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsSITE: Interaction with RNA => ECO:0000269|PubMed:20479262, ECO:0000312|PDB:3MDG, ECO:0000312|PDB:3MDI
ChainResidueDetails
AGLU55
AARG63
BGLU55
BARG63

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphotyrosine => ECO:0007744|PubMed:15592455
ChainResidueDetails
ATYR40
BTYR40

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS56
BLYS56

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PDB entries from 2024-07-17

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