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5PM6

PanDDA analysis group deposition -- Crystal Structure of JMJD2D after initial refinement with no ligand modelled (structure 164)

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues5
Detailsbinding site for residue NI A 402
ChainResidue
AHIS192
AGLU194
AHIS280
AOGA404
AHOH570

site_idAC3
Number of Residues7
Detailsbinding site for residue MG A 403
ChainResidue
AASN65
AILE66
ASER67
AGLU68
AILE69
AVAL170
AVAL171

site_idAC4
Number of Residues13
Detailsbinding site for residue OGA A 404
ChainResidue
ATYR136
APHE189
AHIS192
AGLU194
ASER200
AASN202
ALYS210
AHIS280
AALA292
ANI402
AEDO412
AHOH570
AHOH752

site_idAC5
Number of Residues7
Detailsbinding site for residue EDO A 405
ChainResidue
ALYS150
AGLN151
ATRP152
AASN153
AHIS156
AHOH566
AHOH732

site_idAC6
Number of Residues4
Detailsbinding site for residue EDO A 406
ChainResidue
ATHR252
ALYS255
AARG263
AHOH644

site_idAC7
Number of Residues8
Detailsbinding site for residue EDO A 407
ChainResidue
AGLU224
AALA240
APHE241
ALEU242
ATYR279
ASER308
AHOH509
AHOH510

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 408
ChainResidue
AASP64
AASN65
AILE66
ASER67
AGLU68
AARG82
AHOH524

site_idAC9
Number of Residues5
Detailsbinding site for residue EDO A 409
ChainResidue
APHE118
AARG263
AILE264
ATHR265
AHOH528

site_idAD1
Number of Residues10
Detailsbinding site for residue EDO A 410
ChainResidue
ATRP57
ALYS58
AALA59
AARG60
ATYR63
ATYR203
AHOH503
AHOH517
AHOH568
AHOH716

site_idAD2
Number of Residues7
Detailsbinding site for residue EDO A 411
ChainResidue
ASER80
ATHR87
ACYS168
APHE231
ALYS305
AHOH527
AHOH531

site_idAD3
Number of Residues6
Detailsbinding site for residue EDO A 412
ChainResidue
ATYR181
ASER200
AALA292
AASN294
AOGA404
AHOH570

site_idAD4
Number of Residues6
Detailsbinding site for residue SO4 A 413
ChainResidue
AARG102
AHIS103
AASN106
AHOH502
AHOH549
AHOH635

site_idAD5
Number of Residues8
Detailsbinding site for residue SO4 A 414
ChainResidue
AARG60
AGLU61
ATHR62
AASN65
AHOH501
AHOH542
AHOH658
AHOH735

site_idAD6
Number of Residues4
Detailsbinding site for residue SO4 A 415
ChainResidue
ALYS127
AASN128
AARG123
ALYS124

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ALYS245
ATYR136
AASN202
ALYS210

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
AHIS244
ACYS310
ACYS312
ACYS238

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

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PDB entries from 2024-06-12

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