5OU5
Crystal structure of maize chloroplastic photosynthetic NADP(+)-dependent malic enzyme
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004470 | molecular_function | malic enzyme activity |
A | 0004473 | molecular_function | malate dehydrogenase (decarboxylating) (NADP+) activity |
A | 0006090 | biological_process | pyruvate metabolic process |
A | 0006108 | biological_process | malate metabolic process |
A | 0008948 | molecular_function | oxaloacetate decarboxylase activity |
A | 0009507 | cellular_component | chloroplast |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
A | 0046872 | molecular_function | metal ion binding |
A | 0051287 | molecular_function | NAD binding |
B | 0004470 | molecular_function | malic enzyme activity |
B | 0004473 | molecular_function | malate dehydrogenase (decarboxylating) (NADP+) activity |
B | 0006090 | biological_process | pyruvate metabolic process |
B | 0006108 | biological_process | malate metabolic process |
B | 0008948 | molecular_function | oxaloacetate decarboxylase activity |
B | 0009507 | cellular_component | chloroplast |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
B | 0046872 | molecular_function | metal ion binding |
B | 0051287 | molecular_function | NAD binding |
C | 0004470 | molecular_function | malic enzyme activity |
C | 0004473 | molecular_function | malate dehydrogenase (decarboxylating) (NADP+) activity |
C | 0006090 | biological_process | pyruvate metabolic process |
C | 0006108 | biological_process | malate metabolic process |
C | 0008948 | molecular_function | oxaloacetate decarboxylase activity |
C | 0009507 | cellular_component | chloroplast |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
C | 0046872 | molecular_function | metal ion binding |
C | 0051287 | molecular_function | NAD binding |
D | 0004470 | molecular_function | malic enzyme activity |
D | 0004473 | molecular_function | malate dehydrogenase (decarboxylating) (NADP+) activity |
D | 0006090 | biological_process | pyruvate metabolic process |
D | 0006108 | biological_process | malate metabolic process |
D | 0008948 | molecular_function | oxaloacetate decarboxylase activity |
D | 0009507 | cellular_component | chloroplast |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
D | 0046872 | molecular_function | metal ion binding |
D | 0051287 | molecular_function | NAD binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | binding site for residue NA A 701 |
Chain | Residue |
A | PHE326 |
A | ALA334 |
A | ASN349 |
site_id | AC2 |
Number of Residues | 1 |
Details | binding site for residue NA A 702 |
Chain | Residue |
A | SER208 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue NA A 703 |
Chain | Residue |
A | ARG633 |
A | TYR635 |
A | HOH981 |
site_id | AC4 |
Number of Residues | 2 |
Details | binding site for residue K A 704 |
Chain | Residue |
A | LEU239 |
A | ASN492 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue NA B 701 |
Chain | Residue |
A | PRO202 |
A | GLN203 |
A | GLY204 |
B | TYR98 |
B | LEU125 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue NA B 702 |
Chain | Residue |
B | MET158 |
B | GLN161 |
B | VAL253 |
B | ALA257 |
B | HOH885 |
site_id | AC7 |
Number of Residues | 5 |
Details | binding site for residue NA B 703 |
Chain | Residue |
B | TYR539 |
B | ILE540 |
B | GLY543 |
B | SER593 |
B | ILE596 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue NA B 704 |
Chain | Residue |
B | GLU165 |
B | ARG166 |
B | PRO267 |
B | TYR628 |
B | HOH859 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue NA B 705 |
Chain | Residue |
B | SER489 |
B | SER491 |
B | SER497 |
B | GLY517 |
B | SER518 |
site_id | AD1 |
Number of Residues | 5 |
Details | binding site for residue NA C 701 |
Chain | Residue |
C | TYR539 |
C | ILE540 |
C | PRO542 |
C | GLY543 |
C | SER593 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue NA C 702 |
Chain | Residue |
C | SER489 |
C | SER491 |
C | SER497 |
C | SER516 |
C | GLY517 |
C | SER518 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue NA C 703 |
Chain | Residue |
C | MET158 |
C | VAL183 |
C | GLY254 |
C | HOH804 |
C | HOH901 |
site_id | AD4 |
Number of Residues | 5 |
Details | binding site for residue NA C 704 |
Chain | Residue |
C | ASP234 |
C | GLU236 |
C | PHE329 |
C | ALA330 |
C | ASN333 |
site_id | AD5 |
Number of Residues | 3 |
Details | binding site for residue NA C 705 |
Chain | Residue |
C | PHE326 |
C | ALA334 |
C | ASN349 |
site_id | AD6 |
Number of Residues | 5 |
Details | binding site for residue NA D 701 |
Chain | Residue |
C | PRO202 |
C | GLN203 |
C | GLY204 |
D | TYR98 |
D | LEU125 |
site_id | AD7 |
Number of Residues | 5 |
Details | binding site for residue NA D 702 |
Chain | Residue |
D | SER489 |
D | SER491 |
D | SER497 |
D | GLY517 |
D | SER518 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue NA D 703 |
Chain | Residue |
D | TYR195 |
D | PHE199 |
D | GLN203 |
D | TYR206 |
Functional Information from PROSITE/UniProt
site_id | PS00331 |
Number of Residues | 17 |
Details | MALIC_ENZYMES Malic enzymes signature. FnDDiqGTAsVvLAGLL |
Chain | Residue | Details |
A | PHE348-LEU364 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: Proton donor => ECO:0000250 |
Chain | Residue | Details |
A | TYR184 | |
B | TYR184 | |
C | TYR184 | |
D | TYR184 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | ACT_SITE: Proton acceptor => ECO:0000250 |
Chain | Residue | Details |
A | LYS255 | |
B | LYS255 | |
C | LYS255 | |
D | LYS255 |
site_id | SWS_FT_FI3 |
Number of Residues | 24 |
Details | BINDING: BINDING => ECO:0000250 |
Chain | Residue | Details |
A | ARG237 | |
B | ASP351 | |
B | LEU380 | |
B | ASN492 | |
C | ARG237 | |
C | GLU327 | |
C | ASP328 | |
C | ASP351 | |
C | LEU380 | |
C | ASN492 | |
D | ARG237 | |
A | GLU327 | |
D | GLU327 | |
D | ASP328 | |
D | ASP351 | |
D | LEU380 | |
D | ASN492 | |
A | ASP328 | |
A | ASP351 | |
A | LEU380 | |
A | ASN492 | |
B | ARG237 | |
B | GLU327 | |
B | ASP328 |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | SITE: Important for activity => ECO:0000250 |
Chain | Residue | Details |
A | ASP351 | |
B | ASP351 | |
C | ASP351 | |
D | ASP351 |