5NTD
Structure of Leucyl aminopeptidase from Trypanosoma brucei in complex with Bestatin
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004177 | molecular_function | aminopeptidase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0006508 | biological_process | proteolysis |
A | 0008233 | molecular_function | peptidase activity |
A | 0019538 | biological_process | protein metabolic process |
A | 0030145 | molecular_function | manganese ion binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0070006 | molecular_function | metalloaminopeptidase activity |
B | 0004177 | molecular_function | aminopeptidase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0006508 | biological_process | proteolysis |
B | 0008233 | molecular_function | peptidase activity |
B | 0019538 | biological_process | protein metabolic process |
B | 0030145 | molecular_function | manganese ion binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0070006 | molecular_function | metalloaminopeptidase activity |
C | 0004177 | molecular_function | aminopeptidase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0006508 | biological_process | proteolysis |
C | 0008233 | molecular_function | peptidase activity |
C | 0019538 | biological_process | protein metabolic process |
C | 0030145 | molecular_function | manganese ion binding |
C | 0046872 | molecular_function | metal ion binding |
C | 0070006 | molecular_function | metalloaminopeptidase activity |
D | 0004177 | molecular_function | aminopeptidase activity |
D | 0005515 | molecular_function | protein binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0006508 | biological_process | proteolysis |
D | 0008233 | molecular_function | peptidase activity |
D | 0019538 | biological_process | protein metabolic process |
D | 0030145 | molecular_function | manganese ion binding |
D | 0046872 | molecular_function | metal ion binding |
D | 0070006 | molecular_function | metalloaminopeptidase activity |
E | 0004177 | molecular_function | aminopeptidase activity |
E | 0005515 | molecular_function | protein binding |
E | 0005737 | cellular_component | cytoplasm |
E | 0006508 | biological_process | proteolysis |
E | 0008233 | molecular_function | peptidase activity |
E | 0019538 | biological_process | protein metabolic process |
E | 0030145 | molecular_function | manganese ion binding |
E | 0046872 | molecular_function | metal ion binding |
E | 0070006 | molecular_function | metalloaminopeptidase activity |
F | 0004177 | molecular_function | aminopeptidase activity |
F | 0005515 | molecular_function | protein binding |
F | 0005737 | cellular_component | cytoplasm |
F | 0006508 | biological_process | proteolysis |
F | 0008233 | molecular_function | peptidase activity |
F | 0019538 | biological_process | protein metabolic process |
F | 0030145 | molecular_function | manganese ion binding |
F | 0046872 | molecular_function | metal ion binding |
F | 0070006 | molecular_function | metalloaminopeptidase activity |
G | 0004177 | molecular_function | aminopeptidase activity |
G | 0005515 | molecular_function | protein binding |
G | 0005737 | cellular_component | cytoplasm |
G | 0006508 | biological_process | proteolysis |
G | 0008233 | molecular_function | peptidase activity |
G | 0019538 | biological_process | protein metabolic process |
G | 0030145 | molecular_function | manganese ion binding |
G | 0046872 | molecular_function | metal ion binding |
G | 0070006 | molecular_function | metalloaminopeptidase activity |
H | 0004177 | molecular_function | aminopeptidase activity |
H | 0005515 | molecular_function | protein binding |
H | 0005737 | cellular_component | cytoplasm |
H | 0006508 | biological_process | proteolysis |
H | 0008233 | molecular_function | peptidase activity |
H | 0019538 | biological_process | protein metabolic process |
H | 0030145 | molecular_function | manganese ion binding |
H | 0046872 | molecular_function | metal ion binding |
H | 0070006 | molecular_function | metalloaminopeptidase activity |
I | 0004177 | molecular_function | aminopeptidase activity |
I | 0005515 | molecular_function | protein binding |
I | 0005737 | cellular_component | cytoplasm |
I | 0006508 | biological_process | proteolysis |
I | 0008233 | molecular_function | peptidase activity |
I | 0019538 | biological_process | protein metabolic process |
I | 0030145 | molecular_function | manganese ion binding |
I | 0046872 | molecular_function | metal ion binding |
I | 0070006 | molecular_function | metalloaminopeptidase activity |
J | 0004177 | molecular_function | aminopeptidase activity |
J | 0005515 | molecular_function | protein binding |
J | 0005737 | cellular_component | cytoplasm |
J | 0006508 | biological_process | proteolysis |
J | 0008233 | molecular_function | peptidase activity |
J | 0019538 | biological_process | protein metabolic process |
J | 0030145 | molecular_function | manganese ion binding |
J | 0046872 | molecular_function | metal ion binding |
J | 0070006 | molecular_function | metalloaminopeptidase activity |
K | 0004177 | molecular_function | aminopeptidase activity |
K | 0005515 | molecular_function | protein binding |
K | 0005737 | cellular_component | cytoplasm |
K | 0006508 | biological_process | proteolysis |
K | 0008233 | molecular_function | peptidase activity |
K | 0019538 | biological_process | protein metabolic process |
K | 0030145 | molecular_function | manganese ion binding |
K | 0046872 | molecular_function | metal ion binding |
K | 0070006 | molecular_function | metalloaminopeptidase activity |
L | 0004177 | molecular_function | aminopeptidase activity |
L | 0005515 | molecular_function | protein binding |
L | 0005737 | cellular_component | cytoplasm |
L | 0006508 | biological_process | proteolysis |
L | 0008233 | molecular_function | peptidase activity |
L | 0019538 | biological_process | protein metabolic process |
L | 0030145 | molecular_function | manganese ion binding |
L | 0046872 | molecular_function | metal ion binding |
L | 0070006 | molecular_function | metalloaminopeptidase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 9 |
Details | binding site for residue EPE A 601 |
Chain | Residue |
A | SER97 |
A | LYS98 |
A | PHE99 |
A | LYS135 |
A | HOH921 |
C | GLU73 |
C | ARG77 |
L | GLU21 |
L | EPE601 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 602 |
Chain | Residue |
A | SER112 |
A | ARG113 |
A | HOH876 |
E | ASN420 |
E | TYR444 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue MN A 603 |
Chain | Residue |
A | ASP294 |
A | ASP371 |
A | GLU373 |
A | MN604 |
A | BES605 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue MN A 604 |
Chain | Residue |
A | LYS289 |
A | ASP294 |
A | ASP312 |
A | GLU373 |
A | MN603 |
A | BES605 |
site_id | AC5 |
Number of Residues | 18 |
Details | binding site for residue BES A 605 |
Chain | Residue |
A | LYS289 |
A | ASP294 |
A | LYS301 |
A | MET309 |
A | ASP312 |
A | ASP371 |
A | GLU373 |
A | THR401 |
A | LEU402 |
A | THR403 |
A | GLY404 |
A | LEU463 |
A | ARG467 |
A | TYR498 |
A | MN603 |
A | MN604 |
A | BCT606 |
A | HOH812 |
site_id | AC6 |
Number of Residues | 7 |
Details | binding site for residue BCT A 606 |
Chain | Residue |
A | LYS289 |
A | ALA372 |
A | GLU373 |
A | GLY374 |
A | ARG375 |
A | LEU402 |
A | BES605 |
site_id | AC7 |
Number of Residues | 5 |
Details | binding site for residue SO4 B 601 |
Chain | Residue |
B | SER112 |
B | ARG113 |
C | ASN420 |
C | TYR444 |
C | HOH832 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue MN B 602 |
Chain | Residue |
B | ASP294 |
B | ASP371 |
B | GLU373 |
B | MN603 |
B | BES604 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue MN B 603 |
Chain | Residue |
B | LYS289 |
B | ASP294 |
B | ASP312 |
B | GLU373 |
B | MN602 |
B | BES604 |
site_id | AD1 |
Number of Residues | 17 |
Details | binding site for residue BES B 604 |
Chain | Residue |
B | LYS289 |
B | ASP294 |
B | LYS301 |
B | MET309 |
B | ASP312 |
B | ASP371 |
B | GLU373 |
B | THR401 |
B | LEU402 |
B | THR403 |
B | GLY404 |
B | LEU463 |
B | ARG467 |
B | MN602 |
B | MN603 |
B | BCT605 |
B | HOH784 |
site_id | AD2 |
Number of Residues | 7 |
Details | binding site for residue BCT B 605 |
Chain | Residue |
B | LYS289 |
B | ALA372 |
B | GLU373 |
B | GLY374 |
B | ARG375 |
B | LEU402 |
B | BES604 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue SO4 D 601 |
Chain | Residue |
D | SER112 |
D | ARG113 |
D | HOH924 |
F | ASN420 |
F | TYR444 |
site_id | AD4 |
Number of Residues | 5 |
Details | binding site for residue MN D 602 |
Chain | Residue |
D | BES604 |
D | ASP294 |
D | ASP371 |
D | GLU373 |
D | MN603 |
site_id | AD5 |
Number of Residues | 6 |
Details | binding site for residue MN D 603 |
Chain | Residue |
D | LYS289 |
D | ASP294 |
D | ASP312 |
D | GLU373 |
D | MN602 |
D | BES604 |
site_id | AD6 |
Number of Residues | 18 |
Details | binding site for residue BES D 604 |
Chain | Residue |
D | LYS289 |
D | ASP294 |
D | LYS301 |
D | MET309 |
D | ASP312 |
D | ASN369 |
D | ASP371 |
D | GLU373 |
D | THR401 |
D | LEU402 |
D | THR403 |
D | GLY404 |
D | ARG467 |
D | MN602 |
D | MN603 |
D | BCT605 |
D | HOH722 |
D | HOH727 |
site_id | AD7 |
Number of Residues | 8 |
Details | binding site for residue BCT D 605 |
Chain | Residue |
D | LYS289 |
D | ALA372 |
D | GLU373 |
D | GLY374 |
D | ARG375 |
D | LEU402 |
D | BES604 |
D | HOH727 |
site_id | AD8 |
Number of Residues | 5 |
Details | binding site for residue SO4 C 601 |
Chain | Residue |
B | ASN420 |
B | TYR444 |
C | SER112 |
C | ARG113 |
C | HOH850 |
site_id | AD9 |
Number of Residues | 5 |
Details | binding site for residue MN C 602 |
Chain | Residue |
C | ASP294 |
C | ASP371 |
C | GLU373 |
C | MN603 |
C | BES604 |
site_id | AE1 |
Number of Residues | 6 |
Details | binding site for residue MN C 603 |
Chain | Residue |
C | LYS289 |
C | ASP294 |
C | ASP312 |
C | GLU373 |
C | MN602 |
C | BES604 |
site_id | AE2 |
Number of Residues | 16 |
Details | binding site for residue BES C 604 |
Chain | Residue |
C | LYS289 |
C | ASP294 |
C | LYS301 |
C | MET309 |
C | ASP312 |
C | ASP371 |
C | GLU373 |
C | THR401 |
C | LEU402 |
C | THR403 |
C | GLY404 |
C | ARG467 |
C | MN602 |
C | MN603 |
C | BCT605 |
C | HOH728 |
site_id | AE3 |
Number of Residues | 7 |
Details | binding site for residue BCT C 605 |
Chain | Residue |
C | LYS289 |
C | ALA372 |
C | GLU373 |
C | GLY374 |
C | ARG375 |
C | LEU402 |
C | BES604 |
site_id | AE4 |
Number of Residues | 7 |
Details | binding site for residue EPE E 601 |
Chain | Residue |
A | ASN420 |
A | GLU421 |
A | TYR444 |
A | THR488 |
E | SER112 |
E | ARG113 |
E | HOH712 |
site_id | AE5 |
Number of Residues | 5 |
Details | binding site for residue MN E 602 |
Chain | Residue |
E | ASP294 |
E | ASP371 |
E | GLU373 |
E | MN603 |
E | BES604 |
site_id | AE6 |
Number of Residues | 6 |
Details | binding site for residue MN E 603 |
Chain | Residue |
E | LYS289 |
E | ASP294 |
E | ASP312 |
E | GLU373 |
E | MN602 |
E | BES604 |
site_id | AE7 |
Number of Residues | 16 |
Details | binding site for residue BES E 604 |
Chain | Residue |
E | LYS289 |
E | ASP294 |
E | LYS301 |
E | MET309 |
E | ASP312 |
E | ASP371 |
E | GLU373 |
E | THR401 |
E | LEU402 |
E | THR403 |
E | GLY404 |
E | ARG467 |
E | MN602 |
E | MN603 |
E | BCT605 |
E | HOH775 |
site_id | AE8 |
Number of Residues | 7 |
Details | binding site for residue BCT E 605 |
Chain | Residue |
E | LYS289 |
E | ALA372 |
E | GLU373 |
E | GLY374 |
E | ARG375 |
E | LEU402 |
E | BES604 |
site_id | AE9 |
Number of Residues | 5 |
Details | binding site for residue SO4 F 601 |
Chain | Residue |
D | ASN420 |
D | TYR444 |
F | SER112 |
F | ARG113 |
F | HOH766 |
site_id | AF1 |
Number of Residues | 5 |
Details | binding site for residue MN F 602 |
Chain | Residue |
F | ASP294 |
F | ASP371 |
F | GLU373 |
F | MN603 |
F | BES604 |
site_id | AF2 |
Number of Residues | 6 |
Details | binding site for residue MN F 603 |
Chain | Residue |
F | LYS289 |
F | ASP294 |
F | ASP312 |
F | GLU373 |
F | MN602 |
F | BES604 |
site_id | AF3 |
Number of Residues | 16 |
Details | binding site for residue BES F 604 |
Chain | Residue |
F | LYS289 |
F | ASP294 |
F | LYS301 |
F | ASP312 |
F | ASP371 |
F | GLU373 |
F | THR401 |
F | LEU402 |
F | THR403 |
F | GLY404 |
F | LEU463 |
F | ARG467 |
F | MN602 |
F | MN603 |
F | BCT605 |
F | HOH708 |
site_id | AF4 |
Number of Residues | 7 |
Details | binding site for residue BCT F 605 |
Chain | Residue |
F | LYS289 |
F | ALA372 |
F | GLU373 |
F | GLY374 |
F | ARG375 |
F | LEU402 |
F | BES604 |
site_id | AF5 |
Number of Residues | 5 |
Details | binding site for residue SO4 G 601 |
Chain | Residue |
G | SER112 |
G | ARG113 |
G | HOH849 |
K | ASN420 |
K | TYR444 |
site_id | AF6 |
Number of Residues | 5 |
Details | binding site for residue MN G 602 |
Chain | Residue |
G | ASP294 |
G | ASP371 |
G | GLU373 |
G | MN603 |
G | BES604 |
site_id | AF7 |
Number of Residues | 6 |
Details | binding site for residue MN G 603 |
Chain | Residue |
G | LYS289 |
G | ASP294 |
G | ASP312 |
G | GLU373 |
G | MN602 |
G | BES604 |
site_id | AF8 |
Number of Residues | 17 |
Details | binding site for residue BES G 604 |
Chain | Residue |
G | LYS289 |
G | ASP294 |
G | LYS301 |
G | MET309 |
G | ASP312 |
G | ASP371 |
G | GLU373 |
G | THR401 |
G | LEU402 |
G | THR403 |
G | GLY404 |
G | LEU463 |
G | ARG467 |
G | MN602 |
G | MN603 |
G | BCT605 |
G | HOH750 |
site_id | AF9 |
Number of Residues | 6 |
Details | binding site for residue BCT G 605 |
Chain | Residue |
G | ALA372 |
G | GLU373 |
G | GLY374 |
G | ARG375 |
G | LEU402 |
G | BES604 |
site_id | AG1 |
Number of Residues | 5 |
Details | binding site for residue SO4 H 601 |
Chain | Residue |
H | SER112 |
H | ARG113 |
H | HOH841 |
J | ASN420 |
J | TYR444 |
site_id | AG2 |
Number of Residues | 5 |
Details | binding site for residue MN H 602 |
Chain | Residue |
H | ASP294 |
H | ASP371 |
H | GLU373 |
H | MN603 |
H | BES604 |
site_id | AG3 |
Number of Residues | 6 |
Details | binding site for residue MN H 603 |
Chain | Residue |
H | LYS289 |
H | ASP294 |
H | ASP312 |
H | GLU373 |
H | MN602 |
H | BES604 |
site_id | AG4 |
Number of Residues | 16 |
Details | binding site for residue BES H 604 |
Chain | Residue |
H | LYS289 |
H | ASP294 |
H | LYS301 |
H | MET309 |
H | ASP312 |
H | ASP371 |
H | GLU373 |
H | THR401 |
H | LEU402 |
H | THR403 |
H | GLY404 |
H | LEU463 |
H | MN602 |
H | MN603 |
H | BCT605 |
H | HOH709 |
site_id | AG5 |
Number of Residues | 7 |
Details | binding site for residue BCT H 605 |
Chain | Residue |
H | LYS289 |
H | ALA372 |
H | GLU373 |
H | GLY374 |
H | ARG375 |
H | LEU402 |
H | BES604 |
site_id | AG6 |
Number of Residues | 3 |
Details | binding site for residue SO4 I 601 |
Chain | Residue |
I | ARG113 |
L | ASN420 |
L | TYR444 |
site_id | AG7 |
Number of Residues | 5 |
Details | binding site for residue MN I 602 |
Chain | Residue |
I | ASP294 |
I | ASP371 |
I | GLU373 |
I | MN603 |
I | BES604 |
site_id | AG8 |
Number of Residues | 6 |
Details | binding site for residue MN I 603 |
Chain | Residue |
I | LYS289 |
I | ASP294 |
I | ASP312 |
I | GLU373 |
I | MN602 |
I | BES604 |
site_id | AG9 |
Number of Residues | 16 |
Details | binding site for residue BES I 604 |
Chain | Residue |
I | LYS289 |
I | ASP294 |
I | LYS301 |
I | MET309 |
I | ASP312 |
I | ASP371 |
I | GLU373 |
I | THR401 |
I | LEU402 |
I | THR403 |
I | GLY404 |
I | ARG467 |
I | MN602 |
I | MN603 |
I | BCT605 |
I | HOH751 |
site_id | AH1 |
Number of Residues | 7 |
Details | binding site for residue BCT I 605 |
Chain | Residue |
I | ASP371 |
I | ALA372 |
I | GLU373 |
I | GLY374 |
I | ARG375 |
I | LEU402 |
I | BES604 |
site_id | AH2 |
Number of Residues | 5 |
Details | binding site for residue SO4 J 601 |
Chain | Residue |
H | ASN420 |
H | TYR444 |
J | SER112 |
J | ARG113 |
J | HOH855 |
site_id | AH3 |
Number of Residues | 5 |
Details | binding site for residue MN J 602 |
Chain | Residue |
J | ASP294 |
J | ASP371 |
J | GLU373 |
J | MN603 |
J | BES604 |
site_id | AH4 |
Number of Residues | 6 |
Details | binding site for residue MN J 603 |
Chain | Residue |
J | LYS289 |
J | ASP294 |
J | ASP312 |
J | GLU373 |
J | MN602 |
J | BES604 |
site_id | AH5 |
Number of Residues | 16 |
Details | binding site for residue BES J 604 |
Chain | Residue |
J | LYS289 |
J | ASP294 |
J | LYS301 |
J | ASP312 |
J | ASP371 |
J | GLU373 |
J | THR401 |
J | LEU402 |
J | THR403 |
J | GLY404 |
J | LEU463 |
J | ARG467 |
J | MN602 |
J | MN603 |
J | BCT605 |
J | HOH770 |
site_id | AH6 |
Number of Residues | 7 |
Details | binding site for residue BCT J 605 |
Chain | Residue |
J | LYS289 |
J | ALA372 |
J | GLU373 |
J | GLY374 |
J | ARG375 |
J | LEU402 |
J | BES604 |
site_id | AH7 |
Number of Residues | 5 |
Details | binding site for residue SO4 K 601 |
Chain | Residue |
G | ASN420 |
G | TYR444 |
K | SER112 |
K | ARG113 |
K | HOH870 |
site_id | AH8 |
Number of Residues | 5 |
Details | binding site for residue MN K 602 |
Chain | Residue |
K | ASP294 |
K | ASP371 |
K | GLU373 |
K | MN603 |
K | BES604 |
site_id | AH9 |
Number of Residues | 6 |
Details | binding site for residue MN K 603 |
Chain | Residue |
K | LYS289 |
K | ASP294 |
K | ASP312 |
K | GLU373 |
K | MN602 |
K | BES604 |
site_id | AI1 |
Number of Residues | 16 |
Details | binding site for residue BES K 604 |
Chain | Residue |
K | LYS289 |
K | ASP294 |
K | LYS301 |
K | MET309 |
K | ASP312 |
K | ASP371 |
K | GLU373 |
K | THR401 |
K | LEU402 |
K | THR403 |
K | GLY404 |
K | LEU463 |
K | MN602 |
K | MN603 |
K | BCT605 |
K | HOH739 |
site_id | AI2 |
Number of Residues | 7 |
Details | binding site for residue BCT K 605 |
Chain | Residue |
K | LYS289 |
K | ALA372 |
K | GLU373 |
K | GLY374 |
K | ARG375 |
K | LEU402 |
K | BES604 |
site_id | AI3 |
Number of Residues | 10 |
Details | binding site for residue EPE L 601 |
Chain | Residue |
A | ALA95 |
A | GLY96 |
A | EPE601 |
L | GLU21 |
L | LYS23 |
L | GLU200 |
L | ALA201 |
L | THR204 |
L | ARG328 |
L | HOH701 |
site_id | AI4 |
Number of Residues | 3 |
Details | binding site for residue SO4 L 602 |
Chain | Residue |
I | ASN420 |
L | SER112 |
L | ARG113 |
site_id | AI5 |
Number of Residues | 5 |
Details | binding site for residue MN L 603 |
Chain | Residue |
L | ASP294 |
L | ASP371 |
L | GLU373 |
L | MN604 |
L | BES605 |
site_id | AI6 |
Number of Residues | 6 |
Details | binding site for residue MN L 604 |
Chain | Residue |
L | LYS289 |
L | ASP294 |
L | ASP312 |
L | GLU373 |
L | MN603 |
L | BES605 |
site_id | AI7 |
Number of Residues | 16 |
Details | binding site for residue BES L 605 |
Chain | Residue |
L | LYS289 |
L | ASP294 |
L | LYS301 |
L | MET309 |
L | ASP312 |
L | ASP371 |
L | GLU373 |
L | THR401 |
L | LEU402 |
L | THR403 |
L | GLY404 |
L | LEU463 |
L | MN603 |
L | MN604 |
L | BCT606 |
L | HOH739 |
site_id | AI8 |
Number of Residues | 6 |
Details | binding site for residue BCT L 606 |
Chain | Residue |
L | ALA372 |
L | GLU373 |
L | GLY374 |
L | ARG375 |
L | LEU402 |
L | BES605 |
Functional Information from PROSITE/UniProt
site_id | PS00631 |
Number of Residues | 8 |
Details | CYTOSOL_AP Cytosol aminopeptidase signature. NTDAEGRI |
Chain | Residue | Details |
A | ASN369-ILE376 |