5NH4
Crystal structure of xylose isomerase from Piromyces E2 in complex with one Mg2+ ions and glycerol
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005975 | biological_process | carbohydrate metabolic process |
| A | 0009045 | molecular_function | xylose isomerase activity |
| A | 0016853 | molecular_function | isomerase activity |
| A | 0042732 | biological_process | D-xylose metabolic process |
| A | 0044577 | biological_process | xylose catabolic process to ethanol |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005975 | biological_process | carbohydrate metabolic process |
| B | 0009045 | molecular_function | xylose isomerase activity |
| B | 0016853 | molecular_function | isomerase activity |
| B | 0042732 | biological_process | D-xylose metabolic process |
| B | 0044577 | biological_process | xylose catabolic process to ethanol |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005975 | biological_process | carbohydrate metabolic process |
| C | 0009045 | molecular_function | xylose isomerase activity |
| C | 0016853 | molecular_function | isomerase activity |
| C | 0042732 | biological_process | D-xylose metabolic process |
| C | 0044577 | biological_process | xylose catabolic process to ethanol |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005975 | biological_process | carbohydrate metabolic process |
| D | 0009045 | molecular_function | xylose isomerase activity |
| D | 0016853 | molecular_function | isomerase activity |
| D | 0042732 | biological_process | D-xylose metabolic process |
| D | 0044577 | biological_process | xylose catabolic process to ethanol |
| D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | binding site for residue MG A 501 |
| Chain | Residue |
| A | GLU233 |
| A | GLU269 |
| A | ASP297 |
| A | ASP340 |
| A | GOL503 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 A 502 |
| Chain | Residue |
| A | HOH668 |
| B | GLY417 |
| B | GLU418 |
| A | SER112 |
| A | ILE113 |
| A | HOH665 |
| A | HOH667 |
| site_id | AC3 |
| Number of Residues | 10 |
| Details | binding site for residue GOL A 503 |
| Chain | Residue |
| A | HIS102 |
| A | TRP140 |
| A | TRP189 |
| A | GLU233 |
| A | GLU269 |
| A | HIS272 |
| A | ASP297 |
| A | ASP340 |
| A | MG501 |
| A | HOH747 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | binding site for residue GOL A 504 |
| Chain | Residue |
| A | GLU249 |
| A | LYS256 |
| A | HOH622 |
| A | HOH647 |
| A | HOH688 |
| B | ALA257 |
| B | HOH706 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue MG B 501 |
| Chain | Residue |
| B | GLU233 |
| B | GLU269 |
| B | ASP297 |
| B | ASP340 |
| B | GOL503 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 B 502 |
| Chain | Residue |
| A | GLY417 |
| A | GLU418 |
| B | SER112 |
| B | ILE113 |
| B | HOH664 |
| B | HOH670 |
| B | HOH792 |
| site_id | AC7 |
| Number of Residues | 12 |
| Details | binding site for residue GOL B 503 |
| Chain | Residue |
| B | HIS102 |
| B | TRP140 |
| B | TRP189 |
| B | GLU233 |
| B | GLU269 |
| B | HIS272 |
| B | ASP297 |
| B | ASP340 |
| B | MG501 |
| B | HOH613 |
| B | HOH644 |
| B | HOH820 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | binding site for residue GOL B 504 |
| Chain | Residue |
| A | HOH704 |
| B | GLU249 |
| B | HOH615 |
| B | HOH775 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | binding site for residue GOL B 505 |
| Chain | Residue |
| A | LYS384 |
| A | LYS385 |
| A | TYR388 |
| B | ASP202 |
| B | ARG205 |
| site_id | AD1 |
| Number of Residues | 1 |
| Details | binding site for residue GOL B 506 |
| Chain | Residue |
| B | ASP29 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue GOL B 507 |
| Chain | Residue |
| B | GLN10 |
| B | ASN21 |
| B | LEU23 |
| B | HOH608 |
| site_id | AD3 |
| Number of Residues | 7 |
| Details | binding site for residue GOL B 508 |
| Chain | Residue |
| B | HIS26 |
| B | ASP362 |
| B | ALA363 |
| B | ARG366 |
| B | HOH680 |
| C | ALA434 |
| C | GLN437 |
| site_id | AD4 |
| Number of Residues | 5 |
| Details | binding site for residue MG C 501 |
| Chain | Residue |
| C | GLU233 |
| C | GLU269 |
| C | ASP297 |
| C | ASP340 |
| C | GOL504 |
| site_id | AD5 |
| Number of Residues | 10 |
| Details | binding site for residue SO4 C 502 |
| Chain | Residue |
| A | ALA2 |
| C | GLY417 |
| C | GLU418 |
| C | HOH638 |
| C | HOH647 |
| C | HOH747 |
| C | HOH836 |
| D | SER112 |
| D | ILE113 |
| D | HOH652 |
| site_id | AD6 |
| Number of Residues | 7 |
| Details | binding site for residue GOL C 503 |
| Chain | Residue |
| C | GLU249 |
| C | LYS256 |
| C | HOH602 |
| C | HOH607 |
| C | HOH640 |
| C | HOH802 |
| D | ALA257 |
| site_id | AD7 |
| Number of Residues | 13 |
| Details | binding site for residue GOL C 504 |
| Chain | Residue |
| C | GLU233 |
| C | GLU269 |
| C | HIS272 |
| C | ASP297 |
| C | ASP340 |
| C | MG501 |
| C | HOH691 |
| C | HOH734 |
| C | HOH755 |
| C | HOH828 |
| C | HIS102 |
| C | TRP140 |
| C | TRP189 |
| site_id | AD8 |
| Number of Residues | 5 |
| Details | binding site for residue MG D 501 |
| Chain | Residue |
| D | GLU233 |
| D | GLU269 |
| D | ASP297 |
| D | ASP340 |
| D | GOL502 |
| site_id | AD9 |
| Number of Residues | 10 |
| Details | binding site for residue GOL D 502 |
| Chain | Residue |
| D | HIS102 |
| D | TRP140 |
| D | TRP189 |
| D | GLU233 |
| D | GLU269 |
| D | HIS272 |
| D | ASP297 |
| D | ASP340 |
| D | MG501 |
| D | HOH711 |
