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5NFJ

Crystal structure of the methyltransferase subunit of human mitochondrial Ribonuclease P (MRPP1) bound to S-adenosyl-methionine (SAM)

Functional Information from GO Data
ChainGOidnamespacecontents
A0005739cellular_componentmitochondrion
A0008033biological_processtRNA processing
B0005739cellular_componentmitochondrion
B0008033biological_processtRNA processing
C0005739cellular_componentmitochondrion
C0008033biological_processtRNA processing
Functional Information from PDB Data
site_idAC1
Number of Residues19
Detailsbinding site for residue SAM A 501
ChainResidue
ALEU290
ASER322
ALEU336
ALEU338
ALYS349
AASN350
ALEU351
AMET356
AHOH607
AHOH613
AHOH616
ATHR291
AALA292
AILE309
AGLY310
APHE312
AASP314
AGLN318
ATHR321

site_idAC2
Number of Residues4
Detailsbinding site for residue GOL A 502
ChainResidue
ATHR299
APHE301
AASN368
ATRP369

site_idAC3
Number of Residues6
Detailsbinding site for residue GOL A 503
ChainResidue
AMET298
ATHR299
ATHR300
AARG302
AGLU334
AHOH622

site_idAC4
Number of Residues4
Detailsbinding site for residue GOL A 504
ChainResidue
AARG236
CMET215
CLYS216
CLEU220

site_idAC5
Number of Residues6
Detailsbinding site for residue EDO A 505
ChainResidue
AGLN226
ATHR352
AASP354
AGLN355
AHOH608
AHOH623

site_idAC6
Number of Residues1
Detailsbinding site for residue EDO A 506
ChainResidue
AVAL279

site_idAC7
Number of Residues20
Detailsbinding site for residue SAM B 501
ChainResidue
BLEU290
BTHR291
BALA292
BILE309
BGLY310
BPHE312
BASP314
BGLN318
BTHR321
BSER322
BCYS335
BLEU336
BLYS349
BASN350
BLEU351
BMET356
BHOH609
BHOH620
BHOH644
BHOH660

site_idAC8
Number of Residues3
Detailsbinding site for residue GOL B 502
ChainResidue
BVAL279
BASP280
BPRO283

site_idAC9
Number of Residues6
Detailsbinding site for residue GOL B 503
ChainResidue
AVAL238
APRO240
BASN213
BMET215
CARG217
CGLN221

site_idAD1
Number of Residues5
Detailsbinding site for residue GOL B 504
ChainResidue
BTHR299
BTHR300
BPHE301
BGLY367
BTRP369

site_idAD2
Number of Residues5
Detailsbinding site for residue EDO B 505
ChainResidue
BILE250
BHIS255
BTRP266
BSER273
BHOH625

site_idAD3
Number of Residues3
Detailsbinding site for residue EDO B 506
ChainResidue
BCYS362
BASN366
BGLU371

site_idAD4
Number of Residues20
Detailsbinding site for residue SAM C 501
ChainResidue
CHOH615
CHOH625
CHOH629
CLEU290
CTHR291
CALA292
CILE309
CGLY310
CPHE312
CASP314
CGLN318
CTHR321
CSER322
CCYS335
CLEU336
CLYS349
CASN350
CLEU351
CMET356
CHOH610

site_idAD5
Number of Residues4
Detailsbinding site for residue GOL C 502
ChainResidue
CTHR300
CPHE301
CGLY367
CTRP369

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PDB entries from 2024-11-06

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