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5NAF

Co-crystal structure of an MeCP2 peptide with TBLR1 WD40 domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0003714molecular_functiontranscription corepressor activity
B0003714molecular_functiontranscription corepressor activity
C0003714molecular_functiontranscription corepressor activity
D0003714molecular_functiontranscription corepressor activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue GOL A 601
ChainResidue
AASN382
ACYS383
BHOH707

site_idAC2
Number of Residues2
Detailsbinding site for residue GOL A 602
ChainResidue
AASP381
AHOH800

site_idAC3
Number of Residues5
Detailsbinding site for residue GOL A 603
ChainResidue
APRO359
ATRP316
AGLN317
ATRP357
AASP358

site_idAC4
Number of Residues9
Detailsbinding site for residue GOL A 604
ChainResidue
APHE306
AHIS307
ASER308
AASP328
AHIS332
AGLN346
BGLY432
BILE433
BCYS434

site_idAC5
Number of Residues7
Detailsbinding site for residue GOL A 605
ChainResidue
ACYS434
AILE435
AHIS436
ATHR437
AGOL607
AHOH753
BGLN346

site_idAC6
Number of Residues6
Detailsbinding site for residue GOL A 606
ChainResidue
APHE420
AGLU443
APRO444
AHOH704
AHOH776
AHOH793

site_idAC7
Number of Residues4
Detailsbinding site for residue GOL A 607
ChainResidue
AILE435
AHIS436
AGOL605
AHOH708

site_idAC8
Number of Residues3
Detailsbinding site for residue GOL B 601
ChainResidue
BASN412
BMET414
BILE435

site_idAC9
Number of Residues2
Detailsbinding site for residue GOL B 602
ChainResidue
ATHR327
BARG431

site_idAD1
Number of Residues4
Detailsbinding site for residue GOL B 603
ChainResidue
BTRP177
BPRO179
BTRP491
BASN492

site_idAD2
Number of Residues4
Detailsbinding site for residue GOL B 604
ChainResidue
BLYS266
BASP287
BGLN303
BHOH707

site_idAD3
Number of Residues2
Detailsbinding site for residue GOL B 605
ChainResidue
BPHE462
FVAL300

site_idAD4
Number of Residues2
Detailsbinding site for residue GOL D 601
ChainResidue
DSER159
DVAL477

site_idAD5
Number of Residues1
Detailsbinding site for residue GOL D 602
ChainResidue
DILE215

site_idAD6
Number of Residues3
Detailsbinding site for residue GOL D 605
ChainResidue
DLEU258
DHOH714
DHOH717

site_idAD7
Number of Residues1
Detailsbinding site for residue GOL D 606
ChainResidue
DASN160

Functional Information from PROSITE/UniProt
site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. LASGsgDsTARIWNL
ChainResidueDetails
ALEU184-LEU198
AILE281-ALA295
ALEU415-VAL429
ALEU457-THR471

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues156
DetailsRepeat: {"description":"WD 3"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues76
DetailsRepeat: {"description":"WD 4"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues117
DetailsRepeat: {"description":"WD 5"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues96
DetailsRepeat: {"description":"WD 6"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues156
DetailsRepeat: {"description":"WD 7"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues96
DetailsRepeat: {"description":"WD 8"}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues8
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"UniProtKB","id":"Q9BZK7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues117
DetailsRepeat: {"description":"WD 2"}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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