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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5N6L

Structure of the membrane integral lipoprotein N-acyltransferase Lnt C387A mutant from E. coli

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005515	molecular_function	protein binding
A	0005886	cellular_component	plasma membrane
A	0016020	cellular_component	membrane
A	0016410	molecular_function	N-acyltransferase activity
A	0016740	molecular_function	transferase activity
A	0016746	molecular_function	acyltransferase activity
A	0030288	cellular_component	outer membrane-bounded periplasmic space
A	0042158	biological_process	lipoprotein biosynthetic process
B	0005515	molecular_function	protein binding
B	0005886	cellular_component	plasma membrane
B	0016020	cellular_component	membrane
B	0016410	molecular_function	N-acyltransferase activity
B	0016740	molecular_function	transferase activity
B	0016746	molecular_function	acyltransferase activity
B	0030288	cellular_component	outer membrane-bounded periplasmic space
B	0042158	biological_process	lipoprotein biosynthetic process

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for residue OLC A 601

Chain	Residue
A	ALA22
A	THR25
A	LEU26
A	TYR31
A	SER70
A	ASN73

site_id	AC2
Number of Residues	7
Details	binding site for residue OLC A 602

Chain	Residue
A	ALA46
A	LEU47
A	PHE49
A	ASN50
A	GLU8
A	ARG13
A	PHE20

site_id	AC3
Number of Residues	6
Details	binding site for residue OLC A 603

Chain	Residue
A	TRP121
A	MET178
A	LEU182
A	ASN191
A	VAL197
A	OLC617

site_id	AC4
Number of Residues	3
Details	binding site for residue OLC A 604

Chain	Residue
A	ARG190
A	ASN191
A	LEU195

site_id	AC5
Number of Residues	6
Details	binding site for residue OLC A 605

Chain	Residue
A	GLN10
A	LEU14
A	ARG52
A	GLN55
A	PHE61
A	OLC619

site_id	AC6
Number of Residues	5
Details	binding site for residue OLC A 606

Chain	Residue
A	ASN488
A	TRP489
A	TRP492
A	OLC608
A	OLC617

site_id	AC7
Number of Residues	3
Details	binding site for residue OLC A 607

Chain	Residue
A	ARG11
A	LEU18
A	PHE65

site_id	AC8
Number of Residues	6
Details	binding site for residue OLC A 608

Chain	Residue
A	PHE137
A	GLU170
A	ASN488
A	TRP492
A	OLC606
A	OLC614

site_id	AC9
Number of Residues	3
Details	binding site for residue OLC A 609

Chain	Residue
A	LEU208
A	TRP213
A	ARG485

site_id	AD1
Number of Residues	2
Details	binding site for residue OLC A 610

Chain	Residue
A	PHE341
A	PRO361

site_id	AD2
Number of Residues	4
Details	binding site for residue OLC A 611

Chain	Residue
A	LEU18
A	ASN73
A	TYR76
A	VAL94

site_id	AD3
Number of Residues	7
Details	binding site for residue OLC A 612

Chain	Residue
A	ILE79
A	LEU97
A	VAL339
A	PHE341
A	PHE416
A	OLC613
A	OLC618

site_id	AD4
Number of Residues	4
Details	binding site for residue OLC A 613

Chain	Residue
A	PHE82
A	PHE341
A	TRP415
A	OLC612

site_id	AD5
Number of Residues	2
Details	binding site for residue OLC A 614

Chain	Residue
A	TRP141
A	OLC608

site_id	AD6
Number of Residues	4
Details	binding site for residue OLC A 615

Chain	Residue
A	LEU26
A	PRO30
A	TYR31
A	PRO356

site_id	AD7
Number of Residues	4
Details	binding site for residue OLC A 616

Chain	Residue
A	VAL196
A	VAL200
A	ALA203
A	LEU497

site_id	AD8
Number of Residues	5
Details	binding site for residue OLC A 617

Chain	Residue
A	VAL197
A	LEU201
A	LEU204
A	OLC603
A	OLC606

site_id	AD9
Number of Residues	4
Details	binding site for residue OLC A 618

Chain	Residue
A	PHE146
A	VAL339
A	PRO340
A	OLC612

site_id	AE1
Number of Residues	4
Details	binding site for residue OLC A 619

Chain	Residue
A	LEU54
A	OLC605
B	ILE211
B	GLN212

site_id	AE2
Number of Residues	4
Details	binding site for residue GOL A 620

Chain	Residue
A	GLY258
A	LYS259
A	SER261
A	GLY292

site_id	AE3
Number of Residues	3
Details	binding site for residue GOL A 621

Chain	Residue
A	TRP141
A	LEU143
A	GOL622

site_id	AE4
Number of Residues	4
Details	binding site for residue GOL A 622

Chain	Residue
A	THR144
A	PRO346
A	LEU347
A	GOL621

site_id	AE5
Number of Residues	1
Details	binding site for residue GOL A 623

Chain	Residue
A	PHE92

site_id	AE6
Number of Residues	2
Details	binding site for residue GOL A 624

Chain	Residue
A	ARG9
A	GLN10

site_id	AE7
Number of Residues	2
Details	binding site for residue GOL A 625

Chain	Residue
A	GOL626
A	HOH705

site_id	AE8
Number of Residues	1
Details	binding site for residue GOL A 626

Chain	Residue
A	GOL625

site_id	AE9
Number of Residues	2
Details	binding site for residue GOL A 627

Chain	Residue
A	PHE202
A	PHE206

site_id	AF1
Number of Residues	5
Details	binding site for residue OLC B 601

Chain	Residue
B	ALA22
B	LEU26
B	TYR31
B	SER70
B	ASN73

site_id	AF2
Number of Residues	6
Details	binding site for residue OLC B 602

Chain	Residue
A	PRO86
A	VAL89
A	PHE92
B	MET178
B	LEU494
B	PHE498

site_id	AF3
Number of Residues	5
Details	binding site for residue OLC B 603

Chain	Residue
B	ILE7
B	ARG13
B	ALA46
B	LEU47
B	PHE49

site_id	AF4
Number of Residues	6
Details	binding site for residue OLC B 604

Chain	Residue
B	VAL134
B	GLU394
B	ASN488
B	TRP489
B	TRP492
B	GLY499

site_id	AF5
Number of Residues	3
Details	binding site for residue OLC B 605

Chain	Residue
B	LEU54
B	LEU96
B	LEU103

site_id	AF6
Number of Residues	3
Details	binding site for residue OLC B 606

Chain	Residue
B	TYR210
B	ILE211
B	GLN212

site_id	AF7
Number of Residues	1
Details	binding site for residue OLC B 607

Chain	Residue
B	ARG209

site_id	AF8
Number of Residues	4
Details	binding site for residue OLC B 608

Chain	Residue
B	PHE137
B	TRP141
B	ASN488
B	TRP492

site_id	AF9
Number of Residues	3
Details	binding site for residue GOL B 609

Chain	Residue
B	TRP141
B	LEU143
B	THR144

site_id	AG1
Number of Residues	4
Details	binding site for residue GOL B 610

Chain	Residue
A	GLU239
A	GLN277
B	GLN277
B	PHE280

site_id	AG2
Number of Residues	1
Details	binding site for residue GOL B 611

Chain	Residue
B	ASP32

site_id	AG3
Number of Residues	3
Details	binding site for residue GOL B 612

Chain	Residue
A	LYS247
A	ASN251
B	ASN244

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	36
Details	TOPO_DOM: Cytoplasmic => ECO:0000269\|PubMed:28675161, ECO:0000269\|PubMed:28885614

Chain	Residue	Details
A	MET1-ARG9
B	GLN509-LYS512
A	PHE49-ARG52
A	PRO117-THR120
A	ARG190-ASN191
A	GLN509-LYS512
B	MET1-ARG9
B	PHE49-ARG52
B	PRO117-THR120
B	ARG190-ASN191

site_id	SWS_FT_FI2
Number of Residues	306
Details	TRANSMEM: Helical => ECO:0000269\|PubMed:28675161

Chain	Residue	Details
A	GLN10-ALA27
B	TRP34-THR48
B	PRO53-PHE68
B	GLY87-TRP116
B	TRP121-TRP141
B	VAL169-LYS189
B	TRP192-TYR210
B	ASN488-ARG508
A	TRP34-THR48
A	PRO53-PHE68
A	GLY87-TRP116
A	TRP121-TRP141
A	VAL169-LYS189
A	TRP192-TYR210
A	ASN488-ARG508
B	GLN10-ALA27

site_id	SWS_FT_FI3
Number of Residues	648
Details	TOPO_DOM: Periplasmic => ECO:0000269\|PubMed:28675161, ECO:0000269\|PubMed:28885614

Chain	Residue	Details
A	PHE28-VAL33
A	GLY69-PRO86
A	VAL142-GLY168
A	ILE211-GLY487
B	PHE28-VAL33
B	GLY69-PRO86
B	VAL142-GLY168
B	ILE211-GLY487

site_id	SWS_FT_FI4
Number of Residues	2
Details	ACT_SITE: Proton acceptor => ECO:0000255\|HAMAP-Rule:MF_01148, ECO:0000305\|PubMed:28675161

Chain	Residue	Details
A	GLU267
B	GLU267

site_id	SWS_FT_FI5
Number of Residues	2
Details	ACT_SITE: ACT_SITE => ECO:0000255\|HAMAP-Rule:MF_01148, ECO:0000305\|PubMed:28675161

Chain	Residue	Details
A	LYS335
B	LYS335

site_id	SWS_FT_FI6
Number of Residues	2
Details	ACT_SITE: Nucleophile => ECO:0000255\|HAMAP-Rule:MF_01148, ECO:0000305\|PubMed:28675161

Chain	Residue	Details
A	ALA387
B	ALA387

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PDB entries from 2025-05-07

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