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5MPS

Structure of a spliceosome remodeled for exon ligation

Functional Information from GO Data
ChainGOidnamespacecontents
a0000350biological_processgeneration of catalytic spliceosome for second transesterification step
a0000386molecular_functionsecond spliceosomal transesterification activity
a0000398biological_processmRNA splicing, via spliceosome
a0005634cellular_componentnucleus
a0005681cellular_componentspliceosomal complex
a0005682cellular_componentU5 snRNP
a0006397biological_processmRNA processing
a0008380biological_processRNA splicing
a0046540cellular_componentU4/U6 x U5 tri-snRNP complex
a0071021cellular_componentU2-type post-spliceosomal complex
a0071028biological_processnuclear mRNA surveillance
A0000244biological_processspliceosomal tri-snRNP complex assembly
A0000350biological_processgeneration of catalytic spliceosome for second transesterification step
A0000386molecular_functionsecond spliceosomal transesterification activity
A0000387biological_processspliceosomal snRNP assembly
A0000389biological_processmRNA 3'-splice site recognition
A0000395biological_processmRNA 5'-splice site recognition
A0000398biological_processmRNA splicing, via spliceosome
A0003723molecular_functionRNA binding
A0003729molecular_functionmRNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005681cellular_componentspliceosomal complex
A0005682cellular_componentU5 snRNP
A0005737cellular_componentcytoplasm
A0006397biological_processmRNA processing
A0008233molecular_functionpeptidase activity
A0008237molecular_functionmetallopeptidase activity
A0008380biological_processRNA splicing
A0017070molecular_functionU6 snRNA binding
A0030619molecular_functionU1 snRNA binding
A0030620molecular_functionU2 snRNA binding
A0030623molecular_functionU5 snRNA binding
A0046540cellular_componentU4/U6 x U5 tri-snRNP complex
A0071013cellular_componentcatalytic step 2 spliceosome
A0097157molecular_functionpre-mRNA intronic binding
b0000243cellular_componentcommitment complex
b0000245biological_processspliceosomal complex assembly
b0000387biological_processspliceosomal snRNP assembly
b0000395biological_processmRNA 5'-splice site recognition
b0000398biological_processmRNA splicing, via spliceosome
b0003674molecular_functionmolecular_function
b0003723molecular_functionRNA binding
b0005515molecular_functionprotein binding
b0005634cellular_componentnucleus
b0005681cellular_componentspliceosomal complex
b0005682cellular_componentU5 snRNP
b0005685cellular_componentU1 snRNP
b0005686cellular_componentU2 snRNP
b0005687cellular_componentU4 snRNP
b0005737cellular_componentcytoplasm
b0006397biological_processmRNA processing
b0008380biological_processRNA splicing
b0032991cellular_componentprotein-containing complex
b0036261biological_process7-methylguanosine cap hypermethylation
b0043229cellular_componentintracellular organelle
b0046540cellular_componentU4/U6 x U5 tri-snRNP complex
b0070990molecular_functionsnRNP binding
b0071001cellular_componentU4/U6 snRNP
b0071004cellular_componentU2-type prespliceosome
b0071013cellular_componentcatalytic step 2 spliceosome
b1903241biological_processU2-type prespliceosome assembly
b1990904cellular_componentribonucleoprotein complex
c0000350biological_processgeneration of catalytic spliceosome for second transesterification step
c0000386molecular_functionsecond spliceosomal transesterification activity
c0000398biological_processmRNA splicing, via spliceosome
c0003676molecular_functionnucleic acid binding
c0005634cellular_componentnucleus
c0005681cellular_componentspliceosomal complex
c0006397biological_processmRNA processing
c0008270molecular_functionzinc ion binding
c0008380biological_processRNA splicing
c0030628molecular_functionpre-mRNA 3'-splice site binding
c0043229cellular_componentintracellular organelle
c0046872molecular_functionmetal ion binding
c0071021cellular_componentU2-type post-spliceosomal complex
C0000244biological_processspliceosomal tri-snRNP complex assembly
C0000349biological_processgeneration of catalytic spliceosome for first transesterification step
C0000387biological_processspliceosomal snRNP assembly
C0000388biological_processspliceosome conformational change to release U4 (or U4atac) and U1 (or U11)
C0000398biological_processmRNA splicing, via spliceosome
C0003924molecular_functionGTPase activity
C0005515molecular_functionprotein binding
C0005525molecular_functionGTP binding
C0005634cellular_componentnucleus
C0005681cellular_componentspliceosomal complex
C0005682cellular_componentU5 snRNP
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006397biological_processmRNA processing
C0008380biological_processRNA splicing
C0030623molecular_functionU5 snRNA binding
C0046540cellular_componentU4/U6 x U5 tri-snRNP complex
C0071007cellular_componentU2-type catalytic step 2 spliceosome
d0000243cellular_componentcommitment complex
d0000245biological_processspliceosomal complex assembly
d0000387biological_processspliceosomal snRNP assembly
d0000395biological_processmRNA 5'-splice site recognition
d0000398biological_processmRNA splicing, via spliceosome
d0003723molecular_functionRNA binding
d0003729molecular_functionmRNA binding
d0005515molecular_functionprotein binding
d0005634cellular_componentnucleus
d0005681cellular_componentspliceosomal complex
d0005682cellular_componentU5 snRNP
d0005685cellular_componentU1 snRNP
d0005686cellular_componentU2 snRNP
d0005687cellular_componentU4 snRNP
d0005737cellular_componentcytoplasm
d0005829cellular_componentcytosol
d0006396biological_processRNA processing
d0006397biological_processmRNA processing
d0008380biological_processRNA splicing
d0034715cellular_componentpICln-Sm protein complex
d0034719cellular_componentSMN-Sm protein complex
d0036261biological_process7-methylguanosine cap hypermethylation
d0046540cellular_componentU4/U6 x U5 tri-snRNP complex
d0071001cellular_componentU4/U6 snRNP
d0071004cellular_componentU2-type prespliceosome
d0071011cellular_componentprecatalytic spliceosome
d0071013cellular_componentcatalytic step 2 spliceosome
d0097525cellular_componentspliceosomal snRNP complex
d0097526cellular_componentspliceosomal tri-snRNP complex
d1903241biological_processU2-type prespliceosome assembly
d1990904cellular_componentribonucleoprotein complex
e0000243cellular_componentcommitment complex
e0000245biological_processspliceosomal complex assembly
e0000387biological_processspliceosomal snRNP assembly
e0000395biological_processmRNA 5'-splice site recognition
e0000398biological_processmRNA splicing, via spliceosome
e0003723molecular_functionRNA binding
e0005515molecular_functionprotein binding
e0005634cellular_componentnucleus
e0005681cellular_componentspliceosomal complex
e0005682cellular_componentU5 snRNP
e0005685cellular_componentU1 snRNP
e0005686cellular_componentU2 snRNP
e0005687cellular_componentU4 snRNP
e0005737cellular_componentcytoplasm
e0006397biological_processmRNA processing
e0008380biological_processRNA splicing
e0032991cellular_componentprotein-containing complex
e0034715cellular_componentpICln-Sm protein complex
e0036261biological_process7-methylguanosine cap hypermethylation
e0043229cellular_componentintracellular organelle
e0046540cellular_componentU4/U6 x U5 tri-snRNP complex
e0071001cellular_componentU4/U6 snRNP
e0071004cellular_componentU2-type prespliceosome
e0071011cellular_componentprecatalytic spliceosome
e1903241biological_processU2-type prespliceosome assembly
e1990935molecular_functionsplicing factor binding
f0000243cellular_componentcommitment complex
f0000245biological_processspliceosomal complex assembly
f0000387biological_processspliceosomal snRNP assembly
f0000395biological_processmRNA 5'-splice site recognition
f0000398biological_processmRNA splicing, via spliceosome
f0003723molecular_functionRNA binding
f0005515molecular_functionprotein binding
f0005634cellular_componentnucleus
f0005681cellular_componentspliceosomal complex
f0005682cellular_componentU5 snRNP
f0005685cellular_componentU1 snRNP
f0005686cellular_componentU2 snRNP
f0005687cellular_componentU4 snRNP
f0005737cellular_componentcytoplasm
f0006397biological_processmRNA processing
f0008266molecular_functionpoly(U) RNA binding
f0008380biological_processRNA splicing
f0034715cellular_componentpICln-Sm protein complex
f0036261biological_process7-methylguanosine cap hypermethylation
f0046540cellular_componentU4/U6 x U5 tri-snRNP complex
f0071001cellular_componentU4/U6 snRNP
f0071013cellular_componentcatalytic step 2 spliceosome
f0120114cellular_componentSm-like protein family complex
f1903241biological_processU2-type prespliceosome assembly
f1990935molecular_functionsplicing factor binding
g0000243cellular_componentcommitment complex
g0000245biological_processspliceosomal complex assembly
g0000387biological_processspliceosomal snRNP assembly
g0000395biological_processmRNA 5'-splice site recognition
g0000398biological_processmRNA splicing, via spliceosome
g0003674molecular_functionmolecular_function
g0003723molecular_functionRNA binding
g0005515molecular_functionprotein binding
g0005634cellular_componentnucleus
g0005681cellular_componentspliceosomal complex
g0005682cellular_componentU5 snRNP
g0005685cellular_componentU1 snRNP
g0005686cellular_componentU2 snRNP
g0005687cellular_componentU4 snRNP
g0005737cellular_componentcytoplasm
g0006397biological_processmRNA processing
g0008150biological_processbiological_process
g0008380biological_processRNA splicing
g0032991cellular_componentprotein-containing complex
g0034719cellular_componentSMN-Sm protein complex
g0036261biological_process7-methylguanosine cap hypermethylation
g0046540cellular_componentU4/U6 x U5 tri-snRNP complex
g0071001cellular_componentU4/U6 snRNP
g0071004cellular_componentU2-type prespliceosome
g0071011cellular_componentprecatalytic spliceosome
g0071013cellular_componentcatalytic step 2 spliceosome
g0097526cellular_componentspliceosomal tri-snRNP complex
g1903241biological_processU2-type prespliceosome assembly
h0000243cellular_componentcommitment complex
h0000245biological_processspliceosomal complex assembly
h0000387biological_processspliceosomal snRNP assembly
h0000395biological_processmRNA 5'-splice site recognition
h0000398biological_processmRNA splicing, via spliceosome
h0003723molecular_functionRNA binding
h0003729molecular_functionmRNA binding
h0005634cellular_componentnucleus
h0005681cellular_componentspliceosomal complex
h0005682cellular_componentU5 snRNP
h0005685cellular_componentU1 snRNP
h0005686cellular_componentU2 snRNP
h0005687cellular_componentU4 snRNP
h0005737cellular_componentcytoplasm
h0005829cellular_componentcytosol
h0006396biological_processRNA processing
h0006397biological_processmRNA processing
h0008380biological_processRNA splicing
h0030532cellular_componentsmall nuclear ribonucleoprotein complex
h0034715cellular_componentpICln-Sm protein complex
h0034719cellular_componentSMN-Sm protein complex
h0036261biological_process7-methylguanosine cap hypermethylation
h0046540cellular_componentU4/U6 x U5 tri-snRNP complex
h0071001cellular_componentU4/U6 snRNP
h0071004cellular_componentU2-type prespliceosome
h0071011cellular_componentprecatalytic spliceosome
h0071013cellular_componentcatalytic step 2 spliceosome
h0097525cellular_componentspliceosomal snRNP complex
h0097526cellular_componentspliceosomal tri-snRNP complex
h1903241biological_processU2-type prespliceosome assembly
h1990904cellular_componentribonucleoprotein complex
H0000398biological_processmRNA splicing, via spliceosome
H0003674molecular_functionmolecular_function
H0003723molecular_functionRNA binding
H0005634cellular_componentnucleus
H0005681cellular_componentspliceosomal complex
H0005684cellular_componentU2-type spliceosomal complex
H0005737cellular_componentcytoplasm
H0006397biological_processmRNA processing
H0008380biological_processRNA splicing
H0071013cellular_componentcatalytic step 2 spliceosome
j0000243cellular_componentcommitment complex
j0000245biological_processspliceosomal complex assembly
j0000387biological_processspliceosomal snRNP assembly
j0000395biological_processmRNA 5'-splice site recognition
j0000398biological_processmRNA splicing, via spliceosome
j0003674molecular_functionmolecular_function
j0003723molecular_functionRNA binding
j0005515molecular_functionprotein binding
j0005634cellular_componentnucleus
j0005681cellular_componentspliceosomal complex
j0005682cellular_componentU5 snRNP
j0005685cellular_componentU1 snRNP
j0005686cellular_componentU2 snRNP
j0005687cellular_componentU4 snRNP
j0005737cellular_componentcytoplasm
j0005829cellular_componentcytosol
j0006397biological_processmRNA processing
j0008150biological_processbiological_process
j0008380biological_processRNA splicing
j0030532cellular_componentsmall nuclear ribonucleoprotein complex
j0032991cellular_componentprotein-containing complex
j0034715cellular_componentpICln-Sm protein complex
j0036261biological_process7-methylguanosine cap hypermethylation
j0046540cellular_componentU4/U6 x U5 tri-snRNP complex
j0071001cellular_componentU4/U6 snRNP
j0071004cellular_componentU2-type prespliceosome
j0071011cellular_componentprecatalytic spliceosome
j0071013cellular_componentcatalytic step 2 spliceosome
j1903241biological_processU2-type prespliceosome assembly
j1990904cellular_componentribonucleoprotein complex
J0000398biological_processmRNA splicing, via spliceosome
J0000974cellular_componentPrp19 complex
J0003674molecular_functionmolecular_function
J0005515molecular_functionprotein binding
J0005634cellular_componentnucleus
J0005681cellular_componentspliceosomal complex
J0005737cellular_componentcytoplasm
J0006397biological_processmRNA processing
J0008380biological_processRNA splicing
J0071013cellular_componentcatalytic step 2 spliceosome
K0000350biological_processgeneration of catalytic spliceosome for second transesterification step
K0000384molecular_functionfirst spliceosomal transesterification activity
K0000386molecular_functionsecond spliceosomal transesterification activity
K0000398biological_processmRNA splicing, via spliceosome
K0005515molecular_functionprotein binding
K0005634cellular_componentnucleus
K0005681cellular_componentspliceosomal complex
K0006397biological_processmRNA processing
K0008380biological_processRNA splicing
K0071006cellular_componentU2-type catalytic step 1 spliceosome
K0071007cellular_componentU2-type catalytic step 2 spliceosome
K0071014cellular_componentpost-mRNA release spliceosomal complex
L0000282biological_processcellular bud site selection
L0000398biological_processmRNA splicing, via spliceosome
L0003674molecular_functionmolecular_function
L0005515molecular_functionprotein binding
L0005634cellular_componentnucleus
L0005681cellular_componentspliceosomal complex
L0005686cellular_componentU2 snRNP
L0006397biological_processmRNA processing
L0008380biological_processRNA splicing
M0000387biological_processspliceosomal snRNP assembly
M0000398biological_processmRNA splicing, via spliceosome
M0000974cellular_componentPrp19 complex
M0003676molecular_functionnucleic acid binding
M0003723molecular_functionRNA binding
M0005515molecular_functionprotein binding
M0005634cellular_componentnucleus
M0005681cellular_componentspliceosomal complex
M0006397biological_processmRNA processing
M0008270molecular_functionzinc ion binding
M0008380biological_processRNA splicing
M0017070molecular_functionU6 snRNA binding
M0033120biological_processpositive regulation of RNA splicing
M0036002molecular_functionpre-mRNA binding
M0045292biological_processmRNA cis splicing, via spliceosome
M0045787biological_processpositive regulation of cell cycle
M0046872molecular_functionmetal ion binding
M0071006cellular_componentU2-type catalytic step 1 spliceosome
M0071007cellular_componentU2-type catalytic step 2 spliceosome
N0000398biological_processmRNA splicing, via spliceosome
N0000974cellular_componentPrp19 complex
N0003723molecular_functionRNA binding
N0005634cellular_componentnucleus
N0005681cellular_componentspliceosomal complex
N0006397biological_processmRNA processing
N0008380biological_processRNA splicing
N0017070molecular_functionU6 snRNA binding
N0036002molecular_functionpre-mRNA binding
N0071006cellular_componentU2-type catalytic step 1 spliceosome
N0071007cellular_componentU2-type catalytic step 2 spliceosome
o0000348biological_processmRNA branch site recognition
o0000350biological_processgeneration of catalytic spliceosome for second transesterification step
o0000386molecular_functionsecond spliceosomal transesterification activity
o0000389biological_processmRNA 3'-splice site recognition
o0000398biological_processmRNA splicing, via spliceosome
o0003729molecular_functionmRNA binding
o0005515molecular_functionprotein binding
o0005634cellular_componentnucleus
o0005681cellular_componentspliceosomal complex
o0006397biological_processmRNA processing
o0008380biological_processRNA splicing
o0034399cellular_componentnuclear periphery
o0071013cellular_componentcatalytic step 2 spliceosome
O0000350biological_processgeneration of catalytic spliceosome for second transesterification step
O0000386molecular_functionsecond spliceosomal transesterification activity
O0000398biological_processmRNA splicing, via spliceosome
O0000974cellular_componentPrp19 complex
O0003677molecular_functionDNA binding
O0005515molecular_functionprotein binding
O0005634cellular_componentnucleus
O0005681cellular_componentspliceosomal complex
O0005737cellular_componentcytoplasm
O0006397biological_processmRNA processing
O0008380biological_processRNA splicing
O0071006cellular_componentU2-type catalytic step 1 spliceosome
P0000398biological_processmRNA splicing, via spliceosome
P0003674molecular_functionmolecular_function
P0003723molecular_functionRNA binding
P0005515molecular_functionprotein binding
P0005634cellular_componentnucleus
P0005681cellular_componentspliceosomal complex
P0005684cellular_componentU2-type spliceosomal complex
P0006397biological_processmRNA processing
P0008380biological_processRNA splicing
P0045292biological_processmRNA cis splicing, via spliceosome
P0071013cellular_componentcatalytic step 2 spliceosome
R0000398biological_processmRNA splicing, via spliceosome
R0003674molecular_functionmolecular_function
R0005634cellular_componentnucleus
R0005681cellular_componentspliceosomal complex
R0005684cellular_componentU2-type spliceosomal complex
R0005737cellular_componentcytoplasm
R0006397biological_processmRNA processing
R0008380biological_processRNA splicing
S0000245biological_processspliceosomal complex assembly
S0000354biological_processcis assembly of pre-catalytic spliceosome
S0000398biological_processmRNA splicing, via spliceosome
S0000785cellular_componentchromatin
S0000974cellular_componentPrp19 complex
S0003682molecular_functionchromatin binding
S0003688molecular_functionDNA replication origin binding
S0005515molecular_functionprotein binding
S0005634cellular_componentnucleus
S0005681cellular_componentspliceosomal complex
S0006270biological_processDNA replication initiation
S0006396biological_processRNA processing
S0006397biological_processmRNA processing
S0008380biological_processRNA splicing
S0071004cellular_componentU2-type prespliceosome
S0071006cellular_componentU2-type catalytic step 1 spliceosome
S0071007cellular_componentU2-type catalytic step 2 spliceosome
S0071008cellular_componentU2-type post-mRNA release spliceosomal complex
S0071014cellular_componentpost-mRNA release spliceosomal complex
T0000349biological_processgeneration of catalytic spliceosome for first transesterification step
T0000384molecular_functionfirst spliceosomal transesterification activity
T0000386molecular_functionsecond spliceosomal transesterification activity
T0000398biological_processmRNA splicing, via spliceosome
T0000974cellular_componentPrp19 complex
T0005515molecular_functionprotein binding
T0005634cellular_componentnucleus
T0005681cellular_componentspliceosomal complex
T0005829cellular_componentcytosol
T0006396biological_processRNA processing
T0006397biological_processmRNA processing
T0008380biological_processRNA splicing
T0071004cellular_componentU2-type prespliceosome
T0071006cellular_componentU2-type catalytic step 1 spliceosome
T0071007cellular_componentU2-type catalytic step 2 spliceosome
T0071008cellular_componentU2-type post-mRNA release spliceosomal complex
T0071014cellular_componentpost-mRNA release spliceosomal complex
y0000384molecular_functionfirst spliceosomal transesterification activity
y0000386molecular_functionsecond spliceosomal transesterification activity
y0000398biological_processmRNA splicing, via spliceosome
y0000974cellular_componentPrp19 complex
y0005515molecular_functionprotein binding
y0005634cellular_componentnucleus
y0005681cellular_componentspliceosomal complex
y0005829cellular_componentcytosol
y0006397biological_processmRNA processing
y0008380biological_processRNA splicing
y0071004cellular_componentU2-type prespliceosome
y0071006cellular_componentU2-type catalytic step 1 spliceosome
y0071007cellular_componentU2-type catalytic step 2 spliceosome
y0071008cellular_componentU2-type post-mRNA release spliceosomal complex
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue MG 6 1001
ChainResidue
6G78
6A79
6U80

site_idAC2
Number of Residues3
Detailsbinding site for residue MG 6 1002
ChainResidue
6A59
6G60
6U80

site_idAC3
Number of Residues3
Detailsbinding site for residue MG 6 1003
ChainResidue
6G60
6C61
6G77

site_idAC4
Number of Residues2
Detailsbinding site for residue K 6 1004
ChainResidue
6A62
6G81

site_idAC5
Number of Residues1
Detailsbinding site for residue K 6 1005
ChainResidue
6G81

site_idAC6
Number of Residues11
Detailsbinding site for residue IHP A 3001
ChainResidue
AARG236
ALYS517
AHIS659
ALYS684
AHIS685
ATYR688
ATYR689
ALYS697
AGLY698
AASN1618
cARG170

site_idAC7
Number of Residues17
Detailsbinding site for residue GTP C 1101
ChainResidue
AASN405
CLEU142
CHIS143
CGLY145
CLYS146
CTHR147
CSER148
CARG176
CLEU189
CSER190
CALA215
CGLY217
CLYS269
CARG272
CSER315
CTHR316
CLYS317

site_idAC8
Number of Residues4
Detailsbinding site for residue ZN L 1000
ChainResidue
LCYS104
LCYS105
LCYS108
LCYS148

site_idAC9
Number of Residues6
Detailsbinding site for residue ZN L 1001
ChainResidue
LCYS104
LCYS108
LCYS122
LCYS150
LCYS153
LZN1002

site_idAD1
Number of Residues6
Detailsbinding site for residue ZN L 1002
ChainResidue
LCYS108
LCYS120
LCYS122
LCYS145
LCYS150
LZN1001

site_idAD2
Number of Residues4
Detailsbinding site for residue ZN M 1000
ChainResidue
MCYS73
MCYS81
MCYS87
MHIS91

site_idAD3
Number of Residues4
Detailsbinding site for residue ZN N 401
ChainResidue
NCYS34
NCYS37
NCYS61
NCYS64

site_idAD4
Number of Residues4
Detailsbinding site for residue ZN N 402
ChainResidue
NCYS13
NCYS16
NCYS71
NCYS74

Functional Information from PROSITE/UniProt
site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. ILSGgnDhTIKIWDF
ChainResidueDetails
oILE178-PHE192
JILE239-MET253
JVAL281-VAL295

site_idPS00997
Number of Residues23
DetailsG10_1 G10 protein signature 1. LCClRCiqknEtNngstCiCRVP
ChainResidueDetails
LLEU103-PRO125

site_idPS00998
Number of Residues10
DetailsG10_2 G10 protein signature 2. CvHCGCRGCA
ChainResidueDetails
LCYS145-ALA154

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18407956
ChainResidueDetails
ySER45
OTRP84-LEU106
CASN268

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
ChainResidueDetails
ySER124
ySER125

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
ChainResidueDetails
cTHR212

222624

PDB entries from 2024-07-17

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