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5MMA

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI XZ379 (compound 5'g)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0015074biological_processDNA integration
B0003676molecular_functionnucleic acid binding
B0015074biological_processDNA integration
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
AHIS62
AHIS66
ACYS96
ACYS99

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 402
ChainResidue
AHOH563
AASP128
AASP185
AMG403
AVHT417
AHOH533

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 403
ChainResidue
AASP128
AGLU221
AMG402
AVHT417
DHOH105

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 404
ChainResidue
ASER136
AGLN137
ALYS241
AHOH501
AHOH544

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 405
ChainResidue
AHIS338
ALYS339
AHIS357
AHOH511

site_idAC6
Number of Residues5
Detailsbinding site for residue SO4 A 406
ChainResidue
AGLY187
AALA188
AVHT417
AMES418
DDA17

site_idAC7
Number of Residues4
Detailsbinding site for residue SO4 A 407
ChainResidue
ALYS228
ASER332
ALEU333
AARG336

site_idAC8
Number of Residues4
Detailsbinding site for residue GOL A 408
ChainResidue
ASER162
ATHR163
ASER164
AHOH509

site_idAC9
Number of Residues5
Detailsbinding site for residue GOL A 409
ChainResidue
AARG114
ATYR303
AHOH529
CDC6
CGOL101

site_idAD1
Number of Residues5
Detailsbinding site for residue GOL A 410
ChainResidue
AGLN60
ALEU79
ATYR80
APRO277
APHE278

site_idAD2
Number of Residues3
Detailsbinding site for residue GOL A 411
ChainResidue
APRO115
AASP116
CDT3

site_idAD3
Number of Residues5
Detailsbinding site for residue GOL A 412
ChainResidue
ASER225
ATHR232
AARG334
DDA15
DDC16

site_idAD4
Number of Residues6
Detailsbinding site for residue GOL A 413
ChainResidue
APRO214
AGLN215
AARG326
AASP367
AASN368
AVHT417

site_idAD5
Number of Residues3
Detailsbinding site for residue GOL A 414
ChainResidue
AHIS19
ATYR20
BTHR210

site_idAD6
Number of Residues5
Detailsbinding site for residue GOL A 415
ChainResidue
ALYS339
AASP356
AHIS357
AGLY359
AHOH513

site_idAD7
Number of Residues5
Detailsbinding site for residue GOL A 416
ChainResidue
ALEU292
AGLN296
BTYR263
BGLN267
BASP273

site_idAD8
Number of Residues16
Detailsbinding site for residue VHT A 417
ChainResidue
AASP128
AASP185
APRO214
AGLN215
AGLU221
AMG402
AMG403
ASO4406
AGOL413
AMES418
AHOH533
AHOH563
CDG4
DDC16
DDA17
DHOH105

site_idAD9
Number of Residues7
Detailsbinding site for residue MES A 418
ChainResidue
AASP185
AGLN186
AGLY187
APRO211
ATYR212
ASO4406
AVHT417

site_idAE1
Number of Residues6
Detailsbinding site for residue HEZ A 419
ChainResidue
ATYR263
AGLN267
AGLY271
AASN280
ATYR257
ALYS262

site_idAE2
Number of Residues5
Detailsbinding site for residue MG B 401
ChainResidue
BASP128
BASP185
BPHE190
CDA19
CGOL102

site_idAE3
Number of Residues5
Detailsbinding site for residue SO4 B 402
ChainResidue
BLYS219
BARG222
BSER258
BPRO259
BVAL260

site_idAE4
Number of Residues1
Detailsbinding site for residue GOL B 403
ChainResidue
BGLY218

site_idAE5
Number of Residues6
Detailsbinding site for residue HEZ B 404
ChainResidue
ASER175
BLEU155
BTYR156
BTYR243
BPRO247
BGLN250

site_idAE6
Number of Residues8
Detailsbinding site for residue GOL C 101
ChainResidue
AVAL260
ATYR303
AGOL409
CDA7
CDT8
CHOH202
DDC11
DHOH109

site_idAE7
Number of Residues4
Detailsbinding site for residue GOL C 102
ChainResidue
BPRO161
BMG401
CDA19
DDG2

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP123
AASP185
BASP123
BASP185

222624

PDB entries from 2024-07-17

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