Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5MLC

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Functional Information from GO Data

Chain	GOid	namespace	contents
2	0003735	molecular_function	structural constituent of ribosome
2	0005840	cellular_component	ribosome
2	0006412	biological_process	translation
2	0009507	cellular_component	chloroplast
2	0015934	cellular_component	large ribosomal subunit
2	1990904	cellular_component	ribonucleoprotein complex
3	0003735	molecular_function	structural constituent of ribosome
3	0005737	cellular_component	cytoplasm
3	0005840	cellular_component	ribosome
3	0006412	biological_process	translation
3	0009507	cellular_component	chloroplast
3	0043229	cellular_component	intracellular organelle
3	1990904	cellular_component	ribonucleoprotein complex
4	0003735	molecular_function	structural constituent of ribosome
4	0005762	cellular_component	mitochondrial large ribosomal subunit
4	0005840	cellular_component	ribosome
4	0006412	biological_process	translation
4	0009507	cellular_component	chloroplast
4	0019843	molecular_function	rRNA binding
4	1990904	cellular_component	ribonucleoprotein complex
5	0003735	molecular_function	structural constituent of ribosome
5	0005840	cellular_component	ribosome
5	0006412	biological_process	translation
5	0009507	cellular_component	chloroplast
5	0015934	cellular_component	large ribosomal subunit
5	0022625	cellular_component	cytosolic large ribosomal subunit
5	1990904	cellular_component	ribonucleoprotein complex
6	0003735	molecular_function	structural constituent of ribosome
6	0005737	cellular_component	cytoplasm
6	0005840	cellular_component	ribosome
6	0006412	biological_process	translation
6	0009507	cellular_component	chloroplast
6	0043229	cellular_component	intracellular organelle
6	1990904	cellular_component	ribonucleoprotein complex
7	0005840	cellular_component	ribosome
7	0009507	cellular_component	chloroplast
7	0009535	cellular_component	chloroplast thylakoid membrane
7	0019843	molecular_function	rRNA binding
7	0032544	biological_process	plastid translation
7	1990904	cellular_component	ribonucleoprotein complex
8	0003723	molecular_function	RNA binding
8	0003735	molecular_function	structural constituent of ribosome
8	0005840	cellular_component	ribosome
8	0006412	biological_process	translation
8	0009507	cellular_component	chloroplast
8	0019843	molecular_function	rRNA binding
8	1990904	cellular_component	ribonucleoprotein complex
9	0002184	biological_process	cytoplasmic translational termination
9	0005737	cellular_component	cytoplasm
9	0005739	cellular_component	mitochondrion
9	0005829	cellular_component	cytosol
9	0006412	biological_process	translation
9	0009507	cellular_component	chloroplast
9	0009570	cellular_component	chloroplast stroma
9	0032544	biological_process	plastid translation
9	0043023	molecular_function	ribosomal large subunit binding
D	0002181	biological_process	cytoplasmic translation
D	0003723	molecular_function	RNA binding
D	0003735	molecular_function	structural constituent of ribosome
D	0005762	cellular_component	mitochondrial large ribosomal subunit
D	0005840	cellular_component	ribosome
D	0006412	biological_process	translation
D	0009507	cellular_component	chloroplast
D	0015934	cellular_component	large ribosomal subunit
D	0016740	molecular_function	transferase activity
D	0019843	molecular_function	rRNA binding
D	0022625	cellular_component	cytosolic large ribosomal subunit
D	0032543	biological_process	mitochondrial translation
D	1990904	cellular_component	ribonucleoprotein complex
E	0003735	molecular_function	structural constituent of ribosome
E	0005840	cellular_component	ribosome
E	0006412	biological_process	translation
E	0009507	cellular_component	chloroplast
E	0009941	cellular_component	chloroplast envelope
E	0019843	molecular_function	rRNA binding
E	1990904	cellular_component	ribonucleoprotein complex
F	0003735	molecular_function	structural constituent of ribosome
F	0005840	cellular_component	ribosome
F	0006353	biological_process	DNA-templated transcription termination
F	0006412	biological_process	translation
F	0009507	cellular_component	chloroplast
F	0019843	molecular_function	rRNA binding
F	1990904	cellular_component	ribonucleoprotein complex
G	0003735	molecular_function	structural constituent of ribosome
G	0005840	cellular_component	ribosome
G	0006412	biological_process	translation
H	0002181	biological_process	cytoplasmic translation
H	0003735	molecular_function	structural constituent of ribosome
H	0005762	cellular_component	mitochondrial large ribosomal subunit
H	0005840	cellular_component	ribosome
H	0006412	biological_process	translation
H	0009507	cellular_component	chloroplast
H	0019843	molecular_function	rRNA binding
H	0022625	cellular_component	cytosolic large ribosomal subunit
H	1990904	cellular_component	ribonucleoprotein complex
I	0003735	molecular_function	structural constituent of ribosome
I	0005739	cellular_component	mitochondrion
I	0005840	cellular_component	ribosome
I	0006412	biological_process	translation
I	0009507	cellular_component	chloroplast
I	0019843	molecular_function	rRNA binding
I	0022625	cellular_component	cytosolic large ribosomal subunit
I	1990904	cellular_component	ribonucleoprotein complex
L	0003729	molecular_function	mRNA binding
L	0003735	molecular_function	structural constituent of ribosome
L	0005737	cellular_component	cytoplasm
L	0005762	cellular_component	mitochondrial large ribosomal subunit
L	0005840	cellular_component	ribosome
L	0006412	biological_process	translation
L	0009507	cellular_component	chloroplast
L	0017148	biological_process	negative regulation of translation
L	0022625	cellular_component	cytosolic large ribosomal subunit
L	0043229	cellular_component	intracellular organelle
L	1990904	cellular_component	ribonucleoprotein complex
M	0003735	molecular_function	structural constituent of ribosome
M	0005762	cellular_component	mitochondrial large ribosomal subunit
M	0005840	cellular_component	ribosome
M	0006412	biological_process	translation
M	0009507	cellular_component	chloroplast
M	0015934	cellular_component	large ribosomal subunit
M	0019843	molecular_function	rRNA binding
M	0022625	cellular_component	cytosolic large ribosomal subunit
M	0070180	molecular_function	large ribosomal subunit rRNA binding
M	1990904	cellular_component	ribonucleoprotein complex
N	0003729	molecular_function	mRNA binding
N	0003735	molecular_function	structural constituent of ribosome
N	0005762	cellular_component	mitochondrial large ribosomal subunit
N	0005840	cellular_component	ribosome
N	0006412	biological_process	translation
N	0009507	cellular_component	chloroplast
N	0015934	cellular_component	large ribosomal subunit
N	0022625	cellular_component	cytosolic large ribosomal subunit
N	1990904	cellular_component	ribonucleoprotein complex
O	0003735	molecular_function	structural constituent of ribosome
O	0005762	cellular_component	mitochondrial large ribosomal subunit
O	0005840	cellular_component	ribosome
O	0006412	biological_process	translation
O	0009507	cellular_component	chloroplast
O	0019843	molecular_function	rRNA binding
O	0022625	cellular_component	cytosolic large ribosomal subunit
O	0032543	biological_process	mitochondrial translation
O	1990904	cellular_component	ribonucleoprotein complex
P	0003735	molecular_function	structural constituent of ribosome
P	0005762	cellular_component	mitochondrial large ribosomal subunit
P	0005840	cellular_component	ribosome
P	0006412	biological_process	translation
P	0009507	cellular_component	chloroplast
P	0019843	molecular_function	rRNA binding
P	0022625	cellular_component	cytosolic large ribosomal subunit
P	1990904	cellular_component	ribonucleoprotein complex
Q	0003735	molecular_function	structural constituent of ribosome
Q	0005737	cellular_component	cytoplasm
Q	0005739	cellular_component	mitochondrion
Q	0005840	cellular_component	ribosome
Q	0006412	biological_process	translation
Q	0008097	molecular_function	5S rRNA binding
Q	0009507	cellular_component	chloroplast
Q	0019843	molecular_function	rRNA binding
Q	0022625	cellular_component	cytosolic large ribosomal subunit
Q	0043229	cellular_component	intracellular organelle
Q	1990904	cellular_component	ribonucleoprotein complex
R	0003735	molecular_function	structural constituent of ribosome
R	0005840	cellular_component	ribosome
R	0006412	biological_process	translation
R	0009507	cellular_component	chloroplast
R	0019843	molecular_function	rRNA binding
R	1990904	cellular_component	ribonucleoprotein complex
S	0003735	molecular_function	structural constituent of ribosome
S	0005840	cellular_component	ribosome
S	0006412	biological_process	translation
S	0009507	cellular_component	chloroplast
S	0019843	molecular_function	rRNA binding
S	0022625	cellular_component	cytosolic large ribosomal subunit
S	1990904	cellular_component	ribonucleoprotein complex
T	0003723	molecular_function	RNA binding
T	0003735	molecular_function	structural constituent of ribosome
T	0005737	cellular_component	cytoplasm
T	0005840	cellular_component	ribosome
T	0006412	biological_process	translation
T	0009507	cellular_component	chloroplast
T	0019843	molecular_function	rRNA binding
T	0043229	cellular_component	intracellular organelle
T	1990904	cellular_component	ribonucleoprotein complex
U	0003735	molecular_function	structural constituent of ribosome
U	0005840	cellular_component	ribosome
U	0006412	biological_process	translation
U	0009507	cellular_component	chloroplast
U	0015934	cellular_component	large ribosomal subunit
U	0019843	molecular_function	rRNA binding
U	0022625	cellular_component	cytosolic large ribosomal subunit
U	1990904	cellular_component	ribonucleoprotein complex
V	0003729	molecular_function	mRNA binding
V	0003735	molecular_function	structural constituent of ribosome
V	0005840	cellular_component	ribosome
V	0006412	biological_process	translation
V	0009507	cellular_component	chloroplast
V	0019843	molecular_function	rRNA binding
V	0022625	cellular_component	cytosolic large ribosomal subunit
V	1990904	cellular_component	ribonucleoprotein complex
W	0003723	molecular_function	RNA binding
W	0003735	molecular_function	structural constituent of ribosome
W	0005739	cellular_component	mitochondrion
W	0005840	cellular_component	ribosome
W	0006412	biological_process	translation
W	0009507	cellular_component	chloroplast
W	0019843	molecular_function	rRNA binding
W	1990904	cellular_component	ribonucleoprotein complex
X	0003735	molecular_function	structural constituent of ribosome
X	0005762	cellular_component	mitochondrial large ribosomal subunit
X	0005840	cellular_component	ribosome
X	0006412	biological_process	translation
X	0009507	cellular_component	chloroplast
X	0022625	cellular_component	cytosolic large ribosomal subunit
X	1990904	cellular_component	ribonucleoprotein complex
Y	0003735	molecular_function	structural constituent of ribosome
Y	0005762	cellular_component	mitochondrial large ribosomal subunit
Y	0005840	cellular_component	ribosome
Y	0006412	biological_process	translation
Y	0009507	cellular_component	chloroplast
Y	0022625	cellular_component	cytosolic large ribosomal subunit
Y	1990904	cellular_component	ribonucleoprotein complex
Z	0003735	molecular_function	structural constituent of ribosome
Z	0005840	cellular_component	ribosome
Z	0006412	biological_process	translation
Z	0009507	cellular_component	chloroplast
Z	0022625	cellular_component	cytosolic large ribosomal subunit
Z	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PROSITE/UniProt

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrtckelkrd.NGmiirYddNaaVI

Chain	Residue	Details
M	ALA60-ILE86

site_id	PS00358
Number of Residues	17
Details	RIBOSOMAL_L5 Ribosomal protein L5 signature. LalITGQrpVkTkAKtS

Chain	Residue	Details
G	LEU72-SER88

site_id	PS00464
Number of Residues	25
Details	RIBOSOMAL_L22 Ribosomal protein L22 signature. KkvKpRArGRsymikrptCHITIvL

Chain	Residue	Details
U	LYS112-LEU136

site_id	PS00467
Number of Residues	12
Details	RIBOSOMAL_L2 Ribosomal protein L2 signature. PvvRGVVmNPvD

Chain	Residue	Details
D	PRO214-ASP225

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. FkegdmvDisGtTiGKGfqGgikR

Chain	Residue	Details
E	PHE191-ARG214

site_id	PS00475
Number of Residues	31
Details	RIBOSOMAL_L15 Ribosomal protein L15 signature. KILGeGeLstk..LqIkaraFSgsAkekLeaaG

Chain	Residue	Details
N	LYS199-GLY229

site_id	PS00525
Number of Residues	9
Details	RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGV

Chain	Residue	Details
H	PRO194-VAL202

site_id	PS00582
Number of Residues	20
Details	RIBOSOMAL_L33 Ribosomal protein L33 signature. YiTqKNrhntPsrLElrKFC

Chain	Residue	Details
3	TYR33-CYS52

site_id	PS00586
Number of Residues	12
Details	RIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. RRgGKIWVRIFP

Chain	Residue	Details
O	ARG59-PRO70

site_id	PS00651
Number of Residues	28
Details	RIBOSOMAL_L9 Ribosomal protein L9 signature. GkkGqlldVraGFlrNFLlplgkAevvT

Chain	Residue	Details
I	GLY61-THR88

site_id	PS00701
Number of Residues	12
Details	RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGsGKGspeyW

Chain	Residue	Details
O	ARG82-TRP93

site_id	PS00783
Number of Residues	23
Details	RIBOSOMAL_L13 Ribosomal protein L13 signature. VRGMLPkgrl.GRylfnhLkVYkG

Chain	Residue	Details
L	VAL204-GLY226

site_id	PS00828
Number of Residues	26
Details	RIBOSOMAL_L36 Ribosomal protein L36 signature. CekCrlIrRrgrIiViCsnp.KHkQrQ

Chain	Residue	Details
6	CYS11-GLN36

site_id	PS00831
Number of Residues	15
Details	RIBOSOMAL_L27 Ribosomal protein L27 signature. GaIIiRQRGtkfhpG

Chain	Residue	Details
X	GLY90-GLY104

site_id	PS00936
Number of Residues	27
Details	RIBOSOMAL_L35 Ribosomal protein L35 signature. KTHkASaKRFrvtgkgkivrrragk.QH

Chain	Residue	Details
5	LYS93-HIS119

site_id	PS00937
Number of Residues	17
Details	RIBOSOMAL_L20 Ribosomal protein L20 signature. KrdfRrLWITRINaaiR

Chain	Residue	Details
S	LYS54-ARG70

site_id	PS01108
Number of Residues	18
Details	RIBOSOMAL_L24 Ribosomal protein L24 signature. GDtVkVIsGgeKGki.GeI

Chain	Residue	Details
W	GLY72-ILE89

site_id	PS01169
Number of Residues	23
Details	RIBOSOMAL_L21 Ribosomal protein L21 signature. VivfKykkKKnyrrniGHRQpiT

Chain	Residue	Details
T	VAL195-THR217

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	MOD_RES: N-methylmethionine => ECO:0000269\|PubMed:10874046

Chain	Residue	Details
O	MET1

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)