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5MHM

FXIIIa in complex with the inhibitor ZED1630

Functional Information from GO Data
ChainGOidnamespacecontents
A0003810molecular_functionprotein-glutamine gamma-glutamyltransferase activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005615cellular_componentextracellular space
A0005737cellular_componentcytoplasm
A0007596biological_processblood coagulation
A0016746molecular_functionacyltransferase activity
A0018149biological_processpeptide cross-linking
A0031093cellular_componentplatelet alpha granule lumen
A0046872molecular_functionmetal ion binding
A0062023cellular_componentcollagen-containing extracellular matrix
A0072378biological_processblood coagulation, fibrin clot formation
A0072562cellular_componentblood microparticle
A1990234cellular_componenttransferase complex
B0003810molecular_functionprotein-glutamine gamma-glutamyltransferase activity
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005615cellular_componentextracellular space
B0005737cellular_componentcytoplasm
B0007596biological_processblood coagulation
B0016746molecular_functionacyltransferase activity
B0018149biological_processpeptide cross-linking
B0031093cellular_componentplatelet alpha granule lumen
B0046872molecular_functionmetal ion binding
B0062023cellular_componentcollagen-containing extracellular matrix
B0072378biological_processblood coagulation, fibrin clot formation
B0072562cellular_componentblood microparticle
B1990234cellular_componenttransferase complex
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue CA A 801
ChainResidue
AALA264
AASN267
ALYS269
AASP271
AHOH982

site_idAC2
Number of Residues6
Detailsbinding site for residue CA A 802
ChainResidue
AASP351
AASP367
AASP343
AASP345
AASN347
AGLN349

site_idAC3
Number of Residues6
Detailsbinding site for residue CA A 803
ChainResidue
AASN436
AALA457
AGLU485
AGLU490
AHOH933
AHOH1094

site_idAC4
Number of Residues5
Detailsbinding site for residue GOL A 804
ChainResidue
ATYR194
ALEU195
AASP196
ATRP379
AHOH1071

site_idAC5
Number of Residues5
Detailsbinding site for residue GOL A 805
ChainResidue
APHE53
AASP58
ATHR59
ATYR83
AHOH965

site_idAC6
Number of Residues6
Detailsbinding site for residue GOL A 806
ChainResidue
AARG715
AHIS716
BTRP164
BTHR165
BGLY168
BVAL169

site_idAC7
Number of Residues8
Detailsbinding site for residue GOL A 807
ChainResidue
AASN20
AALA21
AGLU23
ALYS156
AARG158
AARG174
AASP179
AHOH1031

site_idAC8
Number of Residues5
Detailsbinding site for residue CL A 808
ChainResidue
AALA268
ALYS269
ALEU275
AGLY277
AHOH1244

site_idAC9
Number of Residues6
Detailsbinding site for residue SO4 A 809
ChainResidue
AHIS51
ALEU52
APHE53
ALYS54
AHOH931
AHOH1045

site_idAD1
Number of Residues5
Detailsbinding site for residue SO4 A 810
ChainResidue
ASER250
AGLY251
AASN254
ALYS257
AHOH904

site_idAD2
Number of Residues5
Detailsbinding site for residue CA B 801
ChainResidue
BALA264
BASN267
BLYS269
BASP271
BHOH1061

site_idAD3
Number of Residues6
Detailsbinding site for residue CA B 802
ChainResidue
BASP343
BASP345
BASN347
BGLN349
BASP351
BASP367

site_idAD4
Number of Residues8
Detailsbinding site for residue GOL B 803
ChainResidue
BTYR194
BLEU195
BASP196
BTRP379
BPHE559
BTHR561
BHOH1008
BHOH1024

site_idAD5
Number of Residues5
Detailsbinding site for residue GOL B 804
ChainResidue
BASP58
BTHR59
BARG143
BHOH902
BHOH918

site_idAD6
Number of Residues6
Detailsbinding site for residue CA B 805
ChainResidue
BASN436
BALA457
BGLU485
BGLU490
BHOH996
BHOH1015

site_idAD7
Number of Residues7
Detailsbinding site for residue SO4 B 806
ChainResidue
BHIS51
BLEU52
BPHE53
BLYS54
BHOH911
BHOH1039
BHOH1202

site_idAD8
Number of Residues5
Detailsbinding site for residue SO4 B 807
ChainResidue
BLYS269
BASP270
BARG681
BHOH1012
BHOH1048

site_idAD9
Number of Residues5
Detailsbinding site for residue SO4 B 808
ChainResidue
BSER250
BGLY251
BASN254
BLYS257
BHOH986

site_idAE1
Number of Residues4
Detailsbinding site for residue CL B 809
ChainResidue
BALA268
BLYS269
BLEU275
BGLY277

site_idAE2
Number of Residues11
Detailsbinding site for residues 7NW H 1 and 1TX H 2
ChainResidue
ATYR214
ATRP279
ACYS314
ATRP315
ATRP370
AASN371
ATYR372
AHIS373
ATHR398
AHOH1039
HNLE3

site_idAE3
Number of Residues11
Detailsbinding site for residues 1TX H 2 and NLE H 3
ChainResidue
ATRP279
ACYS314
ATRP370
AASN371
ATYR372
AHIS373
ATHR398
AHOH1039
H7NW1
HILE4
HLEU5

site_idAE4
Number of Residues7
Detailsbinding site for Di-peptide NLE H 3 and ILE H 4
ChainResidue
AVAL369
ATRP370
AASN371
H7NW1
H1TX2
HLEU5
HPRO6

site_idAE5
Number of Residues8
Detailsbinding site for Di-peptide TRP H 7 and NH2 H 8
ChainResidue
AILE352
AASP367
ASER368
AVAL369
ALEU439
HLEU5
HPRO6
HHOH102

site_idAE6
Number of Residues11
Detailsbinding site for residues 7NW O 1 and 1TX O 2
ChainResidue
BTYR214
BTRP279
BCYS314
BTRP315
BTRP370
BASN371
BTYR372
BHIS373
BTHR398
BGLN400
ONLE3

site_idAE7
Number of Residues11
Detailsbinding site for residues 1TX O 2 and NLE O 3
ChainResidue
BTRP279
BCYS314
BTRP370
BASN371
BTYR372
BHIS373
BTHR398
BGLN400
O7NW1
OILE4
OLEU5

site_idAE8
Number of Residues7
Detailsbinding site for Di-peptide NLE O 3 and ILE O 4
ChainResidue
BVAL369
BTRP370
BASN371
O7NW1
O1TX2
OLEU5
OPRO6

site_idAE9
Number of Residues9
Detailsbinding site for Di-peptide TRP O 7 and NH2 O 8
ChainResidue
BILE352
BVAL360
BASP367
BSER368
BVAL369
OLEU5
OPRO6
OHOH202
OHOH203

Functional Information from PROSITE/UniProt
site_idPS00547
Number of Residues18
DetailsTRANSGLUTAMINASES Transglutaminases active site. GQCWVfAGVfnTfLRCLG
ChainResidueDetails
AGLY312-GLY329

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: ACT_SITE => ECO:0000269|PubMed:7913750
ChainResidueDetails
ACYS314
AHIS373
AASP396
BCYS314
BHIS373
BASP396

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:9988734
ChainResidueDetails
AASN436
AASP438
AGLU485
AGLU490
BASN436
BASP438
BGLU485
BGLU490

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Cleavage; by thrombin; to produce active factor XIII-A
ChainResidueDetails
AARG37
BARG37

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N-acetylserine => ECO:0000305|PubMed:2877456
ChainResidueDetails
ASER1
BSER1

site_idSWS_FT_FI5
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:16335952
ChainResidueDetails
AASN613
BASN613

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 149
ChainResidueDetails
ATRP279electrostatic stabiliser, hydrogen bond donor
ACYS314electrostatic stabiliser
AHIS373electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AASP396electrostatic stabiliser, hydrogen bond acceptor
ATYR560electrostatic stabiliser, hydrogen bond donor

site_idMCSA2
Number of Residues5
DetailsM-CSA 149
ChainResidueDetails
BTRP279electrostatic stabiliser, hydrogen bond donor
BCYS314electrostatic stabiliser
BHIS373electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
BASP396electrostatic stabiliser, hydrogen bond acceptor
BTYR560electrostatic stabiliser, hydrogen bond donor

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PDB entries from 2024-07-10

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