Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5MHL

FXIIIa in complex with the inhibitor Mi0621

Functional Information from GO Data
ChainGOidnamespacecontents
A0003810molecular_functionprotein-glutamine gamma-glutamyltransferase activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005737cellular_componentcytoplasm
A0007596biological_processblood coagulation
A0018149biological_processpeptide cross-linking
A0031012cellular_componentextracellular matrix
A0031093cellular_componentplatelet alpha granule lumen
A0072378biological_processblood coagulation, fibrin clot formation
A0072562cellular_componentblood microparticle
B0003810molecular_functionprotein-glutamine gamma-glutamyltransferase activity
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005737cellular_componentcytoplasm
B0007596biological_processblood coagulation
B0018149biological_processpeptide cross-linking
B0031012cellular_componentextracellular matrix
B0031093cellular_componentplatelet alpha granule lumen
B0072378biological_processblood coagulation, fibrin clot formation
B0072562cellular_componentblood microparticle
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CA A 801
ChainResidue
AASN436
AALA457
AGLU485
AGLU490
AHOH959
AHOH982

site_idAC2
Number of Residues5
Detailsbinding site for residue CA A 802
ChainResidue
AASP271
AHOH943
AALA264
AASN267
ALYS269

site_idAC3
Number of Residues6
Detailsbinding site for residue CA A 803
ChainResidue
AASP343
AASP345
AASN347
AGLN349
AASP351
AASP367

site_idAC4
Number of Residues7
Detailsbinding site for residue GOL A 804
ChainResidue
ATYR194
ALEU195
AASP196
ATRP379
APHE559
ATHR561
AHOH935

site_idAC5
Number of Residues6
Detailsbinding site for residue GOL A 805
ChainResidue
APHE53
AASP58
ATHR59
ATYR83
AARG143
AHOH978

site_idAC6
Number of Residues3
Detailsbinding site for residue GOL A 806
ChainResidue
AVAL50
ASER173
AASN175

site_idAC7
Number of Residues1
Detailsbinding site for residue EDO A 807
ChainResidue
AGLN80

site_idAC8
Number of Residues4
Detailsbinding site for residue SO4 A 808
ChainResidue
AHIS51
ALEU52
APHE53
ALYS54

site_idAC9
Number of Residues5
Detailsbinding site for residue SO4 A 809
ChainResidue
ASER250
AGLY251
AASN254
ALYS257
AHOH927

site_idAD1
Number of Residues6
Detailsbinding site for residue CA B 801
ChainResidue
BASP343
BASP345
BASN347
BGLN349
BASP351
BASP367

site_idAD2
Number of Residues6
Detailsbinding site for residue CA B 802
ChainResidue
BASN436
BALA457
BGLU485
BGLU490
BHOH941
BHOH993

site_idAD3
Number of Residues6
Detailsbinding site for residue GOL B 803
ChainResidue
BTYR194
BASP196
BTRP379
BPHE559
BTHR561
BHOH956

site_idAD4
Number of Residues6
Detailsbinding site for residue GOL B 804
ChainResidue
BPHE53
BASP58
BTHR59
BARG143
BHOH952
BHOH1016

site_idAD5
Number of Residues4
Detailsbinding site for residue SO4 B 805
ChainResidue
BHIS51
BLEU52
BPHE53
BLYS54

site_idAD6
Number of Residues5
Detailsbinding site for residue SO4 B 806
ChainResidue
BSER250
BGLY251
BASN254
BLYS257
BHOH974

site_idAD7
Number of Residues5
Detailsbinding site for residue CA B 807
ChainResidue
BALA264
BASN267
BLYS269
BASP271
BHOH991

site_idAD8
Number of Residues3
Detailsbinding site for Di-peptide 7NX K 1 and PHE K 2
ChainResidue
AASN371
KONL3
KVAL4

site_idAD9
Number of Residues9
Detailsbinding site for Di-peptide PHE K 2 and ONL K 3
ChainResidue
ATRP279
AGLN313
ACYS314
ATRP370
AASN371
ATYR372
AHIS373
K7NX1
KVAL4

site_idAE1
Number of Residues10
Detailsbinding site for Di-peptide ONL K 3 and VAL K 4
ChainResidue
AHIS373
KPHE2
KLYS5
KVAL6
ATRP279
AGLN313
ACYS314
ATRP370
AASN371
ATYR372

site_idAE2
Number of Residues3
Detailsbinding site for Di-peptide GLY K 8 and NH2 K 9
ChainResidue
ATHR365
AASP367
KILE7

site_idAE3
Number of Residues4
Detailsbinding site for Di-peptide 7NX O 1 and PHE O 2
ChainResidue
BTYR214
BASN371
OONL3
OVAL4

site_idAE4
Number of Residues7
Detailsbinding site for Di-peptide PHE O 2 and ONL O 3
ChainResidue
BTRP279
BCYS314
BTRP370
BASN371
BTYR372
O7NX1
OVAL4

site_idAE5
Number of Residues7
Detailsbinding site for Di-peptide ONL O 3 and VAL O 4
ChainResidue
BTRP279
BCYS314
BTRP370
BASN371
BTYR372
OPHE2
OLYS5

site_idAE6
Number of Residues4
Detailsbinding site for Di-peptide GLY O 8 and NH2 O 9
ChainResidue
BTHR365
BASP367
OLYS5
OILE7

Functional Information from PROSITE/UniProt
site_idPS00547
Number of Residues18
DetailsTRANSGLUTAMINASES Transglutaminases active site. GQCWVfAGVfnTfLRCLG
ChainResidueDetails
AGLY312-GLY329

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsActive site: {"evidences":[{"source":"PubMed","id":"7913750","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"9988734","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsSite: {"description":"Cleavage; by thrombin; to produce active factor XIII-A"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"source":"PubMed","id":"16335952","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 149
ChainResidueDetails
ATRP279electrostatic stabiliser, hydrogen bond donor
ACYS314electrostatic stabiliser
AHIS373electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AASP396electrostatic stabiliser, hydrogen bond acceptor
ATYR560electrostatic stabiliser, hydrogen bond donor

site_idMCSA2
Number of Residues5
DetailsM-CSA 149
ChainResidueDetails
BTRP279electrostatic stabiliser, hydrogen bond donor
BCYS314electrostatic stabiliser
BHIS373electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
BASP396electrostatic stabiliser, hydrogen bond acceptor
BTYR560electrostatic stabiliser, hydrogen bond donor

251174

PDB entries from 2026-03-25

PDB statisticsPDBj update infoContact PDBjnumon