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5MFR

The crystal structure of E. coli Aminopeptidase N in complex with 7-amino-5,7,8,9-tetrahydrobenzocyclohepten-6-one

Functional Information from GO Data
ChainGOidnamespacecontents
A0004177molecular_functionaminopeptidase activity
A0005515molecular_functionprotein binding
A0005886cellular_componentplasma membrane
A0006508biological_processproteolysis
A0008237molecular_functionmetallopeptidase activity
A0008270molecular_functionzinc ion binding
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 1001
ChainResidue
AHIS297
AHIS301
AGLU320
A7MK1002
AGOL1011

site_idAC2
Number of Residues18
Detailsbinding site for residue 7MK A 1002
ChainResidue
AHIS297
AGLU298
AHIS301
ALYS319
AGLU320
ATYR381
AZN1001
AGOL1011
AMLI1021
AMLI1022
AHOH1358
AHOH1672
AHOH2243
AHOH2536
AGLU121
AMET260
AALA262
AGLU264

site_idAC3
Number of Residues6
Detailsbinding site for residue GOL A 1003
ChainResidue
AASN623
AGLY791
AARG832
AHOH1119
AHOH1229
AHOH1232

site_idAC4
Number of Residues8
Detailsbinding site for residue GOL A 1004
ChainResidue
AGLU292
AVAL670
AHIS672
AGOL1009
AHOH1387
AHOH1869
AHOH2341
AHOH2650

site_idAC5
Number of Residues7
Detailsbinding site for residue GOL A 1005
ChainResidue
APHE704
AALA707
ALYS738
ATRP739
AHOH1120
AHOH1267
AHOH1780

site_idAC6
Number of Residues10
Detailsbinding site for residue GOL A 1006
ChainResidue
ALEU61
AVAL62
AARG669
AGLU671
AHOH1239
AHOH1310
AHOH2074
AHOH2108
AHOH2130
AHOH2789

site_idAC7
Number of Residues10
Detailsbinding site for residue GOL A 1007
ChainResidue
AASP58
ALEU59
AGLU97
AILE98
ASER99
AHOH1492
AHOH1734
AHOH1938
AHOH2081
AHOH2216

site_idAC8
Number of Residues13
Detailsbinding site for residue GOL A 1008
ChainResidue
AHIS11
AASP12
AARG14
AARG468
ATHR469
ALYS478
AGLN479
AHOH1138
AHOH1401
AHOH1825
AHOH1845
AHOH2289
AHOH2761

site_idAC9
Number of Residues6
Detailsbinding site for residue GOL A 1009
ChainResidue
ATRP74
AGLU671
AGOL1004
AHOH1187
AHOH1902
AHOH2789

site_idAD1
Number of Residues10
Detailsbinding site for residue GOL A 1010
ChainResidue
AMET368
APRO473
AASP474
AALA476
AHOH1126
AHOH1279
AHOH1395
AHOH1534
AHOH1587
AHOH1913

site_idAD2
Number of Residues15
Detailsbinding site for residue GOL A 1011
ChainResidue
ALYS319
AGLU320
ATYR381
AZN1001
A7MK1002
AMLI1021
AHOH1358
AHOH1672
AHOH2536
AGLU121
AALA262
AGLU264
AHIS297
AGLU298
AHIS301

site_idAD3
Number of Residues7
Detailsbinding site for residue GOL A 1012
ChainResidue
ALYS541
AGLU627
APHE629
AASP630
AARG835
AHOH1673
AHOH2324

site_idAD4
Number of Residues6
Detailsbinding site for residue NA A 1013
ChainResidue
ASER332
AASP333
AGLY335
AHOH1970
AHOH2209
AHOH2332

site_idAD5
Number of Residues6
Detailsbinding site for residue NA A 1014
ChainResidue
AHIS771
APHE774
AHOH1400
AHOH1633
AHOH2196
AHOH2222

site_idAD6
Number of Residues6
Detailsbinding site for residue NA A 1015
ChainResidue
ASER508
AHOH1924
AHOH1999
AHOH2163
AHOH2359
AHOH2835

site_idAD7
Number of Residues6
Detailsbinding site for residue NA A 1016
ChainResidue
AASP452
AHOH1149
AHOH1263
AHOH2265
AHOH2283
AHOH2692

site_idAD8
Number of Residues7
Detailsbinding site for residue NA A 1017
ChainResidue
AGLU123
AGLU371
AHOH1159
AHOH1273
AHOH1418
AHOH1597
AHOH2317

site_idAD9
Number of Residues5
Detailsbinding site for residue NA A 1018
ChainResidue
AASN67
ATHR91
AHOH2246
AHOH2394
AHOH2409

site_idAE1
Number of Residues5
Detailsbinding site for residue NA A 1019
ChainResidue
AASP452
ATYR544
AHOH1535
AHOH2340
AHOH2504

site_idAE2
Number of Residues6
Detailsbinding site for residue NA A 1020
ChainResidue
AMET260
AASN373
AGLN821
AHOH1591
AHOH1701
AHOH2146

site_idAE3
Number of Residues10
Detailsbinding site for residue MLI A 1021
ChainResidue
ATYR275
AARG293
AHIS297
AGLU298
A7MK1002
AGOL1011
AMLI1022
AHOH1165
AHOH1669
AHOH2536

site_idAE4
Number of Residues9
Detailsbinding site for residue MLI A 1022
ChainResidue
ATYR376
ATHR377
ALEU378
ATYR381
AGLU382
AARG825
A7MK1002
AMLI1021
AHOH1165

site_idAE5
Number of Residues10
Detailsbinding site for residue MLI A 1023
ChainResidue
ALYS8
AGLU123
ATRP313
APHE314
AVAL369
AMET372
AHOH1136
AHOH1159
AHOH1193
AHOH1929

site_idAE6
Number of Residues9
Detailsbinding site for residue MLI A 1024
ChainResidue
AASP28
ALEU29
AASP30
ALYS33
AVAL35
AARG171
AHOH1116
AHOH1178
AHOH2039

site_idAE7
Number of Residues6
Detailsbinding site for residue DMS A 1025
ChainResidue
ATHR393
ALEU394
ALEU395
AGLY396
AASN507
AHOH1859

site_idAE8
Number of Residues4
Detailsbinding site for residue DMS A 1026
ChainResidue
ATHR393
AGLU535
AHOH1166
AHOH2131

site_idAE9
Number of Residues4
Detailsbinding site for residue CL A 1027
ChainResidue
AASP216
AALA254
ASER273
AHOH1661

site_idAF1
Number of Residues3
Detailsbinding site for residue CL A 1028
ChainResidue
AASN560
AASP561
AHOH2466

site_idAF2
Number of Residues3
Detailsbinding site for residue CL A 1029
ChainResidue
AALA31
AGLN32
AHOH2039

Functional Information from PROSITE/UniProt
site_idPS00142
Number of Residues10
DetailsZINC_PROTEASE Neutral zinc metallopeptidases, zinc-binding region signature. VIGHEYFHNW
ChainResidueDetails
AVAL294-TRP303

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000305|PubMed:16885166, ECO:0000305|PubMed:18416562, ECO:0000305|PubMed:19622865
ChainResidueDetails
AGLU298

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING:
ChainResidueDetails
AGLU121
AGLY261
AHIS297
AHIS301
AGLU320

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Transition state stabilizer => ECO:0000305
ChainResidueDetails
ATYR381

223790

PDB entries from 2024-08-14

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