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5M5B

Crystal structure of Zika virus NS5 methyltransferase

Functional Information from GO Data
ChainGOidnamespacecontents
A0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
A0004483molecular_functionmethyltransferase cap1 activity
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
B0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
B0004483molecular_functionmethyltransferase cap1 activity
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue SAM A 1001
ChainResidue
ASER62
AHIS116
AGLU117
AVAL136
AASP137
AVAL138
APHE139
AASP152
AHOH1109
AHOH1125
AHOH1128
AGLY64
AHOH1177
AGLY87
ACYS88
AGLY89
AGLY92
ATRP93
ATHR110
ALYS111

site_idAC2
Number of Residues5
Detailsbinding site for residue SO4 A 1002
ChainResidue
AARG43
AARG47
ASER62
AARG63
AARG90

site_idAC3
Number of Residues5
Detailsbinding site for residue SO4 A 1003
ChainResidue
APRO256
AVAL257
ATYR259
BTYR31
BLYS237

site_idAC4
Number of Residues7
Detailsbinding site for residue SO4 B 1101
ChainResidue
AARG74
ALYS258
AHOH1104
BARG249
BARG255
BHOH1250
BHOH1322

site_idAC5
Number of Residues5
Detailsbinding site for residue SO4 B 1102
ChainResidue
BHIS116
BGLU117
BARG206
BGOL1103
BHOH1223

site_idAC6
Number of Residues6
Detailsbinding site for residue GOL B 1103
ChainResidue
BGLY87
BTHR110
BLYS111
BSO41102
BHOH1245
BHOH1299

site_idAC7
Number of Residues2
Detailsbinding site for residue CL B 1104
ChainResidue
BARG74
BHOH1278

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsRegion: {"description":"SUMO-interacting motif (SIM)","evidences":[{"source":"UniProtKB","id":"A0A024B7W1","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues8
DetailsRegion: {"description":"Interaction with host SCRIB","evidences":[{"source":"UniProtKB","id":"Q01299","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsActive site: {"description":"For 2'-O-MTase activity","evidences":[{"source":"UniProtKB","id":"Q6YMS4","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues34
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"A0A024B7W1","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues14
DetailsSite: {"description":"mRNA cap binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues4
DetailsSite: {"description":"mRNA cap binding; via carbonyl oxygen","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues6
DetailsSite: {"description":"Essential for 2'-O-methyltransferase activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues2
DetailsSite: {"description":"Essential for 2'-O-methyltransferase and N-7 methyltransferase activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P03314","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

249697

PDB entries from 2026-02-25

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