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5M29

Structure of cobinamide-bound BtuF, the periplasmic vitamin B12 binding protein in E.coli

Functional Information from GO Data
ChainGOidnamespacecontents
A0015889biological_processcobalamin transport
A0031419molecular_functioncobalamin binding
A0042597cellular_componentperiplasmic space
B0015889biological_processcobalamin transport
B0031419molecular_functioncobalamin binding
B0042597cellular_componentperiplasmic space
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue CBY A 301
ChainResidue
APRO31
ASER241
AASP242
AGLU245
AARG246
ACYN302
AHOH408
AHOH410
AHOH421
AHOH459
AHOH474
AALA32
AHOH528
AHOH541
ATYR50
ATRP66
ATRP85
AGLY87
APHE162
APHE168
ATRP196

site_idAC2
Number of Residues3
Detailsbinding site for residue CYN A 302
ChainResidue
ATRP66
ATRP85
ACBY301

site_idAC3
Number of Residues8
Detailsbinding site for residue GOL A 303
ChainResidue
AGLN121
AHOH406
AHOH441
AHOH475
AHOH549
BTRP106
BGOL304
BHOH402

site_idAC4
Number of Residues6
Detailsbinding site for residue GOL A 304
ChainResidue
AVAL194
APRO197
AGLN198
AHOH418
BLYS131
BARG193

site_idAC5
Number of Residues19
Detailsbinding site for residue CBY B 301
ChainResidue
BPRO31
BALA32
BTYR50
BTRP66
BTRP85
BGLY87
BPHE162
BPHE168
BTRP196
BASP242
BGLU245
BARG246
BCYN302
BCYN303
BHOH411
BHOH433
BHOH458
BHOH481
BHOH487

site_idAC6
Number of Residues4
Detailsbinding site for residue CYN B 302
ChainResidue
BTRP66
BTRP85
BCBY301
BCYN303

site_idAC7
Number of Residues5
Detailsbinding site for residue CYN B 303
ChainResidue
BGLU245
BCBY301
BCYN302
BHOH487
BHOH544

site_idAC8
Number of Residues8
Detailsbinding site for residue GOL B 304
ChainResidue
AGOL303
AHOH441
BMET105
BTRP106
BGLN121
BHOH402
BHOH527
BHOH567

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01000, ECO:0000269|PubMed:12468528, ECO:0007744|PDB:1N4A
ChainResidueDetails
ATYR50
BTYR50

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01000, ECO:0000269|PubMed:12468528, ECO:0000269|PubMed:12475936, ECO:0007744|PDB:1N2Z, ECO:0007744|PDB:1N4A
ChainResidueDetails
AASP242
BASP242

site_idSWS_FT_FI3
Number of Residues4
DetailsSITE: Important for BtuC binding => ECO:0000255|HAMAP-Rule:MF_01000, ECO:0000305|PubMed:12475936
ChainResidueDetails
AGLU72
AGLU202
BGLU72
BGLU202

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PDB entries from 2024-07-10

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