5LYC
Cytochrome c in complex with phosphonato-calix[6]arene
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005515 | molecular_function | protein binding |
| A | 0005739 | cellular_component | mitochondrion |
| A | 0005758 | cellular_component | mitochondrial intermembrane space |
| A | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
| A | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
| A | 0009055 | molecular_function | electron transfer activity |
| A | 0020037 | molecular_function | heme binding |
| A | 0046872 | molecular_function | metal ion binding |
| A | 1901612 | molecular_function | cardiolipin binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0005739 | cellular_component | mitochondrion |
| B | 0005758 | cellular_component | mitochondrial intermembrane space |
| B | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
| B | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
| B | 0009055 | molecular_function | electron transfer activity |
| B | 0020037 | molecular_function | heme binding |
| B | 0046872 | molecular_function | metal ion binding |
| B | 1901612 | molecular_function | cardiolipin binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 21 |
| Details | binding site for residue HEC A 201 |
| Chain | Residue |
| A | ARG13 |
| A | TYR48 |
| A | THR49 |
| A | ASN52 |
| A | TRP59 |
| A | MET64 |
| A | TYR67 |
| A | THR78 |
| A | LYS79 |
| A | MET80 |
| A | PHE82 |
| A | CYS14 |
| A | HOH335 |
| A | HOH341 |
| A | CYS17 |
| A | HIS18 |
| A | VAL28 |
| A | ILE35 |
| A | SER40 |
| A | GLY41 |
| A | TYR46 |
| site_id | AC2 |
| Number of Residues | 13 |
| Details | binding site for residue 7AZ A 202 |
| Chain | Residue |
| A | SER2 |
| A | ALA3 |
| A | LYS4 |
| A | ALA7 |
| A | LYS11 |
| A | TYR97 |
| A | LYS100 |
| A | GLU103 |
| A | HOH311 |
| A | HOH312 |
| B | LYS4 |
| B | LYS100 |
| B | 7AZ202 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 203 |
| Chain | Residue |
| A | ARG38 |
| A | HIS39 |
| A | GLN42 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 204 |
| Chain | Residue |
| A | LYS22 |
| A | HIS33 |
| site_id | AC5 |
| Number of Residues | 15 |
| Details | binding site for residue 7AZ B 202 |
| Chain | Residue |
| A | LYS4 |
| A | LYS100 |
| A | 7AZ202 |
| A | HOH311 |
| B | SER2 |
| B | ALA3 |
| B | LYS4 |
| B | ALA7 |
| B | LYS11 |
| B | TYR97 |
| B | LYS100 |
| B | GLU103 |
| B | HOH310 |
| B | HOH315 |
| B | HOH327 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 B 203 |
| Chain | Residue |
| B | ARG38 |
| B | HIS39 |
| B | GLN42 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 B 204 |
| Chain | Residue |
| B | ARG13 |
| B | LYS86 |
| B | HOH333 |
| B | HOH353 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 B 205 |
| Chain | Residue |
| A | HOH303 |
| B | LYS22 |
| B | HIS33 |
| site_id | AC9 |
| Number of Residues | 24 |
| Details | binding site for Di-peptide HEM B 201 and CYS B 17 |
| Chain | Residue |
| B | ARG13 |
| B | CYS14 |
| B | LEU15 |
| B | GLN16 |
| B | HIS18 |
| B | LYS27 |
| B | VAL28 |
| B | GLY29 |
| B | ILE35 |
| B | SER40 |
| B | GLY41 |
| B | TYR46 |
| B | TYR48 |
| B | THR49 |
| B | ASN52 |
| B | TRP59 |
| B | MET64 |
| B | TYR67 |
| B | THR78 |
| B | LYS79 |
| B | MET80 |
| B | LEU94 |
| B | HOH338 |
| B | HOH339 |
| site_id | AD1 |
| Number of Residues | 23 |
| Details | binding site for Di-peptide HEM B 201 and CYS B 14 |
| Chain | Residue |
| B | TYR48 |
| B | THR49 |
| B | ASN52 |
| B | TRP59 |
| B | MET64 |
| B | TYR67 |
| B | THR78 |
| B | LYS79 |
| B | MET80 |
| B | LEU94 |
| B | HOH338 |
| B | HOH339 |
| B | PHE10 |
| B | ARG13 |
| B | LEU15 |
| B | GLN16 |
| B | CYS17 |
| B | HIS18 |
| B | VAL28 |
| B | ILE35 |
| B | SER40 |
| B | GLY41 |
| B | TYR46 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Binding site: {"description":"covalent","evidences":[{"source":"PubMed","id":"11880631","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18390544","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1KYO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3CX5","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | Binding site: {"description":"axial binding residue","evidences":[{"source":"PubMed","id":"11880631","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18390544","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1KYO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3CX5","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6,N6,N6-trimethyllysine; by CTM1","evidences":[{"source":"PubMed","id":"10791961","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11880631","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1KYO","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6,N6,N6-trimethyllysine","evidences":[{"source":"PubMed","id":"10821864","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18390544","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
