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5LXI

GABARAP-L1 ATG4B LIR Complex

Functional Information from GO Data
ChainGOidnamespacecontents
B0000045biological_processautophagosome assembly
B0000421cellular_componentautophagosome membrane
B0000422biological_processautophagy of mitochondrion
B0005515molecular_functionprotein binding
B0005543molecular_functionphospholipid binding
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0005776cellular_componentautophagosome
B0005783cellular_componentendoplasmic reticulum
B0005794cellular_componentGolgi apparatus
B0005829cellular_componentcytosol
B0005856cellular_componentcytoskeleton
B0005874cellular_componentmicrotubule
B0006914biological_processautophagy
B0006995biological_processcellular response to nitrogen starvation
B0008429molecular_functionphosphatidylethanolamine binding
B0016020cellular_componentmembrane
B0030659cellular_componentcytoplasmic vesicle membrane
B0030957molecular_functionTat protein binding
B0031410cellular_componentcytoplasmic vesicle
B0031625molecular_functionubiquitin protein ligase binding
B0048487molecular_functionbeta-tubulin binding
B0050811molecular_functionGABA receptor binding
B0061723biological_processglycophagy
B0097352biological_processautophagosome maturation
D0000045biological_processautophagosome assembly
D0000421cellular_componentautophagosome membrane
D0000422biological_processautophagy of mitochondrion
D0005515molecular_functionprotein binding
D0005543molecular_functionphospholipid binding
D0005737cellular_componentcytoplasm
D0005739cellular_componentmitochondrion
D0005776cellular_componentautophagosome
D0005783cellular_componentendoplasmic reticulum
D0005794cellular_componentGolgi apparatus
D0005829cellular_componentcytosol
D0005856cellular_componentcytoskeleton
D0005874cellular_componentmicrotubule
D0006914biological_processautophagy
D0006995biological_processcellular response to nitrogen starvation
D0008429molecular_functionphosphatidylethanolamine binding
D0016020cellular_componentmembrane
D0030659cellular_componentcytoplasmic vesicle membrane
D0030957molecular_functionTat protein binding
D0031410cellular_componentcytoplasmic vesicle
D0031625molecular_functionubiquitin protein ligase binding
D0048487molecular_functionbeta-tubulin binding
D0050811molecular_functionGABA receptor binding
D0061723biological_processglycophagy
D0097352biological_processautophagosome maturation
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue MG D 201
ChainResidue
DASP45
DHIS69
DHOH304
DHOH317
DHOH340
DHOH343
DHOH348

site_idAC2
Number of Residues12
Detailsbinding site for residue PGE D 202
ChainResidue
DARG65
DALA75
DLEU76
DPHE77
DPHE78
DILE84
DTHR87
DPGE203
DPGE203
DHOH323
DTYR61
DTYR61

site_idAC3
Number of Residues13
Detailsbinding site for residue PGE D 203
ChainResidue
DVAL57
DTYR61
DTYR61
DARG65
DALA75
DPHE77
DILE84
DPRO85
DTHR87
DPGE202
DPGE202
DHOH323
DHOH339

site_idAC4
Number of Residues4
Detailsbinding site for residue EDO D 204
ChainResidue
DGLN59
DPHE62
DLEU63
DHOH310

site_idAC5
Number of Residues5
Detailsbinding site for residue PER D 205
ChainResidue
BARG28
DTYR25
DPRO26
DASP27
DARG28

site_idAC6
Number of Residues5
Detailsbinding site for residue PER D 206
ChainResidue
BTYR25
BPRO26
BASP27
BARG28
DARG28

site_idAC7
Number of Residues6
Detailsbinding site for residue MG B 201
ChainResidue
BHIS69
BASN98
BHOH308
BHOH313
BHOH320
BHOH336

site_idAC8
Number of Residues6
Detailsbinding site for residue MG B 202
ChainResidue
BASP54
BHOH302
BHOH306
BHOH323
BHOH332
CSEP392

site_idAC9
Number of Residues6
Detailsbinding site for residue PEG B 203
ChainResidue
BTYR61
BTYR61
BALA75
BPHE77
BTHR87
BHOH301

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:26378241
ChainResidueDetails
CSEP392
ESEP392

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Cleavage; by ATG4B => ECO:0000269|PubMed:20404487
ChainResidueDetails
DGLY116
BGLY116

site_idSWS_FT_FI3
Number of Residues2
DetailsLIPID: Phosphatidylserine amidated glycine; alternate => ECO:0000269|PubMed:33909989
ChainResidueDetails
DGLY116
BGLY116

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PDB entries from 2024-07-24

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