5LVT
Structure of HU protein from Lactococcus lactis
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003677 | molecular_function | DNA binding |
| A | 0005829 | cellular_component | cytosol |
| A | 0006270 | biological_process | DNA replication initiation |
| A | 0010467 | biological_process | gene expression |
| A | 0030261 | biological_process | chromosome condensation |
| A | 0030527 | molecular_function | structural constituent of chromatin |
| A | 0042802 | molecular_function | identical protein binding |
| A | 1990103 | cellular_component | DnaA-HU complex |
| A | 1990178 | cellular_component | HU-DNA complex |
| B | 0003677 | molecular_function | DNA binding |
| B | 0005829 | cellular_component | cytosol |
| B | 0006270 | biological_process | DNA replication initiation |
| B | 0010467 | biological_process | gene expression |
| B | 0030261 | biological_process | chromosome condensation |
| B | 0030527 | molecular_function | structural constituent of chromatin |
| B | 0042802 | molecular_function | identical protein binding |
| B | 1990103 | cellular_component | DnaA-HU complex |
| B | 1990178 | cellular_component | HU-DNA complex |
| C | 0003677 | molecular_function | DNA binding |
| C | 0005829 | cellular_component | cytosol |
| C | 0006270 | biological_process | DNA replication initiation |
| C | 0010467 | biological_process | gene expression |
| C | 0030261 | biological_process | chromosome condensation |
| C | 0030527 | molecular_function | structural constituent of chromatin |
| C | 0042802 | molecular_function | identical protein binding |
| C | 1990103 | cellular_component | DnaA-HU complex |
| C | 1990178 | cellular_component | HU-DNA complex |
| D | 0003677 | molecular_function | DNA binding |
| D | 0005829 | cellular_component | cytosol |
| D | 0006270 | biological_process | DNA replication initiation |
| D | 0010467 | biological_process | gene expression |
| D | 0030261 | biological_process | chromosome condensation |
| D | 0030527 | molecular_function | structural constituent of chromatin |
| D | 0042802 | molecular_function | identical protein binding |
| D | 1990103 | cellular_component | DnaA-HU complex |
| D | 1990178 | cellular_component | HU-DNA complex |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 3 |
| Details | binding site for residue ACT A 101 |
| Chain | Residue |
| A | MET1 |
| B | LYS14 |
| C | LYS42 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | binding site for residue ACT A 102 |
| Chain | Residue |
| A | PHE80 |
| A | ALA82 |
| C | PRO78 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | binding site for residue ACT A 103 |
| Chain | Residue |
| A | LYS19 |
| A | HOH209 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue ACT A 104 |
| Chain | Residue |
| A | GLY47 |
| C | LYS4 |
| C | GLY30 |
| C | GLU31 |
| C | ACT104 |
| A | ILE46 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | binding site for residue ACT A 105 |
| Chain | Residue |
| A | ARG54 |
| A | GLU55 |
| A | HOH222 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | binding site for residue ACT A 106 |
| Chain | Residue |
| A | LYS4 |
| A | VAL26 |
| A | GLY30 |
| C | PHE29 |
| C | LEU45 |
| C | ACT105 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 B 101 |
| Chain | Residue |
| B | GLY47 |
| B | PHE48 |
| B | GLY83 |
| B | LYS84 |
| B | ALA85 |
| B | HOH210 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 B 102 |
| Chain | Residue |
| B | ARG54 |
| B | ARG56 |
| B | ARG59 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | binding site for residue ACT B 103 |
| Chain | Residue |
| A | ILE46 |
| B | LYS24 |
| B | HOH206 |
| C | LYS4 |
| C | GLN5 |
| C | HOH212 |
| site_id | AD1 |
| Number of Residues | 7 |
| Details | binding site for residue ACT B 104 |
| Chain | Residue |
| B | LYS4 |
| B | VAL26 |
| B | GLY30 |
| D | PHE29 |
| D | LEU45 |
| D | PHE48 |
| D | ACT106 |
| site_id | AD2 |
| Number of Residues | 5 |
| Details | binding site for residue ACT B 105 |
| Chain | Residue |
| B | GLY40 |
| B | GLU41 |
| B | LYS42 |
| B | GLU52 |
| B | THR53 |
| site_id | AD3 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 C 101 |
| Chain | Residue |
| C | ARG54 |
| C | ARG56 |
| C | ALA57 |
| site_id | AD4 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 C 102 |
| Chain | Residue |
| A | GLU41 |
| A | LYS42 |
| C | MET1 |
| C | HOH207 |
| site_id | AD5 |
| Number of Residues | 3 |
| Details | binding site for residue ACT C 103 |
| Chain | Residue |
| C | THR18 |
| C | LYS19 |
| C | HOH206 |
| site_id | AD6 |
| Number of Residues | 7 |
| Details | binding site for residue ACT C 104 |
| Chain | Residue |
| A | PHE29 |
| A | LEU45 |
| A | PHE48 |
| A | ACT104 |
| C | LYS4 |
| C | VAL26 |
| C | GLY30 |
| site_id | AD7 |
| Number of Residues | 6 |
| Details | binding site for residue ACT C 105 |
| Chain | Residue |
| A | GLY30 |
| A | GLU31 |
| A | GLU31 |
| A | ACT106 |
| C | LYS14 |
| C | GLY47 |
| site_id | AD8 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 D 101 |
| Chain | Residue |
| D | ARG54 |
| D | ARG56 |
| site_id | AD9 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 D 102 |
| Chain | Residue |
| C | ARG59 |
| C | ARG62 |
| D | ARG56 |
| site_id | AE1 |
| Number of Residues | 3 |
| Details | binding site for residue ACT D 103 |
| Chain | Residue |
| B | GLU41 |
| B | LYS42 |
| D | MET1 |
| site_id | AE2 |
| Number of Residues | 1 |
| Details | binding site for residue ACT D 104 |
| Chain | Residue |
| D | GLU55 |
| site_id | AE3 |
| Number of Residues | 4 |
| Details | binding site for residue ACT D 105 |
| Chain | Residue |
| B | ILE46 |
| D | LYS4 |
| D | VAL26 |
| D | GLY30 |
| site_id | AE4 |
| Number of Residues | 6 |
| Details | binding site for residue ACT D 106 |
| Chain | Residue |
| B | LYS4 |
| B | ASN27 |
| B | ACT104 |
| C | GLU31 |
| D | ILE46 |
| D | GLY47 |
| site_id | AE5 |
| Number of Residues | 2 |
| Details | binding site for residue ACT D 107 |
| Chain | Residue |
| A | LYS19 |
| D | LYS84 |
Functional Information from PROSITE/UniProt
| site_id | PS00045 |
| Number of Residues | 20 |
| Details | HISTONE_LIKE Bacterial histone-like DNA-binding proteins signature. GFgtFetreRaaRe.GrNPqT |
| Chain | Residue | Details |
| A | GLY47-THR66 |
