5LOE

Structure of full length Cody from Bacillus subtilis in complex with Ile

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0000976	molecular_function	transcription cis-regulatory region binding
A	0001217	molecular_function	DNA-binding transcription repressor activity
A	0003677	molecular_function	DNA binding
A	0003700	molecular_function	DNA-binding transcription factor activity
A	0005515	molecular_function	protein binding
A	0005525	molecular_function	GTP binding
A	0005737	cellular_component	cytoplasm
A	0006351	biological_process	DNA-templated transcription
A	0006355	biological_process	regulation of DNA-templated transcription
A	0032993	cellular_component	protein-DNA complex
A	0045892	biological_process	negative regulation of DNA-templated transcription
B	0000166	molecular_function	nucleotide binding
B	0000976	molecular_function	transcription cis-regulatory region binding
B	0001217	molecular_function	DNA-binding transcription repressor activity
B	0003677	molecular_function	DNA binding
B	0003700	molecular_function	DNA-binding transcription factor activity
B	0005515	molecular_function	protein binding
B	0005525	molecular_function	GTP binding
B	0005737	cellular_component	cytoplasm
B	0006351	biological_process	DNA-templated transcription
B	0006355	biological_process	regulation of DNA-templated transcription
B	0032993	cellular_component	protein-DNA complex
B	0045892	biological_process	negative regulation of DNA-templated transcription
C	0000166	molecular_function	nucleotide binding
C	0000976	molecular_function	transcription cis-regulatory region binding
C	0001217	molecular_function	DNA-binding transcription repressor activity
C	0003677	molecular_function	DNA binding
C	0003700	molecular_function	DNA-binding transcription factor activity
C	0005515	molecular_function	protein binding
C	0005525	molecular_function	GTP binding
C	0005737	cellular_component	cytoplasm
C	0006351	biological_process	DNA-templated transcription
C	0006355	biological_process	regulation of DNA-templated transcription
C	0032993	cellular_component	protein-DNA complex
C	0045892	biological_process	negative regulation of DNA-templated transcription
D	0000166	molecular_function	nucleotide binding
D	0000976	molecular_function	transcription cis-regulatory region binding
D	0001217	molecular_function	DNA-binding transcription repressor activity
D	0003677	molecular_function	DNA binding
D	0003700	molecular_function	DNA-binding transcription factor activity
D	0005515	molecular_function	protein binding
D	0005525	molecular_function	GTP binding
D	0005737	cellular_component	cytoplasm
D	0006351	biological_process	DNA-templated transcription
D	0006355	biological_process	regulation of DNA-templated transcription
D	0032993	cellular_component	protein-DNA complex
D	0045892	biological_process	negative regulation of DNA-templated transcription

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for residue ILE A 301

Chain	Residue
A	ARG61
A	MET62
A	THR96
A	PHE98
A	PRO99
A	VAL100

---

site_id	AC2
Number of Residues	9
Details	binding site for residue ILE B 301

Chain	Residue
B	PHE71
B	TYR75
B	THR96
B	PHE98
B	PRO99
B	VAL100
B	ARG61
B	MET62
B	MET65

---

site_id	AC3
Number of Residues	7
Details	binding site for residue ILE C 301

Chain	Residue
C	ARG61
C	MET62
C	THR96
C	ALA97
C	PHE98
C	PRO99
C	VAL100

---

site_id	AC4
Number of Residues	6
Details	binding site for residue ILE D 301

Chain	Residue
D	ARG61
D	MET65
D	GLU94
D	THR96
D	PHE98
D	VAL100

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	76
Details	DNA binding: {"description":"H-T-H motif","evidences":[{"source":"PubMed","id":"15937175","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	612
Details	Region: {"description":"GAF domain","evidences":[{"source":"PubMed","id":"16488888","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	8
Details	Binding site: {"evidences":[{"source":"PubMed","id":"16488888","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2GX5","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	12
Details	Binding site: {"evidences":[{"source":"PubMed","id":"16488888","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2HGV","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PubMed","id":"28011634","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5LOE","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"17218307","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---