5LOE
Structure of full length Cody from Bacillus subtilis in complex with Ile
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000976 | molecular_function | transcription cis-regulatory region binding |
| A | 0001217 | molecular_function | DNA-binding transcription repressor activity |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003700 | molecular_function | DNA-binding transcription factor activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005525 | molecular_function | GTP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| A | 0032993 | cellular_component | protein-DNA complex |
| A | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| B | 0000976 | molecular_function | transcription cis-regulatory region binding |
| B | 0001217 | molecular_function | DNA-binding transcription repressor activity |
| B | 0003677 | molecular_function | DNA binding |
| B | 0003700 | molecular_function | DNA-binding transcription factor activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005525 | molecular_function | GTP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006355 | biological_process | regulation of DNA-templated transcription |
| B | 0032993 | cellular_component | protein-DNA complex |
| B | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| C | 0000976 | molecular_function | transcription cis-regulatory region binding |
| C | 0001217 | molecular_function | DNA-binding transcription repressor activity |
| C | 0003677 | molecular_function | DNA binding |
| C | 0003700 | molecular_function | DNA-binding transcription factor activity |
| C | 0005515 | molecular_function | protein binding |
| C | 0005525 | molecular_function | GTP binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0006355 | biological_process | regulation of DNA-templated transcription |
| C | 0032993 | cellular_component | protein-DNA complex |
| C | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| D | 0000976 | molecular_function | transcription cis-regulatory region binding |
| D | 0001217 | molecular_function | DNA-binding transcription repressor activity |
| D | 0003677 | molecular_function | DNA binding |
| D | 0003700 | molecular_function | DNA-binding transcription factor activity |
| D | 0005515 | molecular_function | protein binding |
| D | 0005525 | molecular_function | GTP binding |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0006355 | biological_process | regulation of DNA-templated transcription |
| D | 0032993 | cellular_component | protein-DNA complex |
| D | 0045892 | biological_process | negative regulation of DNA-templated transcription |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue ILE A 301 |
| Chain | Residue |
| A | ARG61 |
| A | MET62 |
| A | THR96 |
| A | PHE98 |
| A | PRO99 |
| A | VAL100 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | binding site for residue ILE B 301 |
| Chain | Residue |
| B | PHE71 |
| B | TYR75 |
| B | THR96 |
| B | PHE98 |
| B | PRO99 |
| B | VAL100 |
| B | ARG61 |
| B | MET62 |
| B | MET65 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | binding site for residue ILE C 301 |
| Chain | Residue |
| C | ARG61 |
| C | MET62 |
| C | THR96 |
| C | ALA97 |
| C | PHE98 |
| C | PRO99 |
| C | VAL100 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue ILE D 301 |
| Chain | Residue |
| D | ARG61 |
| D | MET65 |
| D | GLU94 |
| D | THR96 |
| D | PHE98 |
| D | VAL100 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 76 |
| Details | DNA binding: {"description":"H-T-H motif","evidences":[{"source":"PubMed","id":"15937175","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 612 |
| Details | Region: {"description":"GAF domain","evidences":[{"source":"PubMed","id":"16488888","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"16488888","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2GX5","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 12 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"16488888","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2HGV","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"28011634","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5LOE","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 4 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"17218307","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
