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5LNW

Crystal structure of Arabidopsis thaliana Pdx1-I320-G3P complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0006520biological_processamino acid metabolic process
A0006979biological_processresponse to oxidative stress
A0006982biological_processresponse to lipid hydroperoxide
A0009651biological_processresponse to salt stress
A0010224biological_processresponse to UV-B
A0010335biological_processresponse to non-ionic osmotic stress
A0012505cellular_componentendomembrane system
A0015994biological_processchlorophyll metabolic process
A0016829molecular_functionlyase activity
A0036381molecular_functionpyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity
A0042538biological_processhyperosmotic salinity response
A0042803molecular_functionprotein homodimerization activity
A0042819biological_processvitamin B6 biosynthetic process
A0042823biological_processpyridoxal phosphate biosynthetic process
A0046982molecular_functionprotein heterodimerization activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0006520biological_processamino acid metabolic process
B0006979biological_processresponse to oxidative stress
B0006982biological_processresponse to lipid hydroperoxide
B0009651biological_processresponse to salt stress
B0010224biological_processresponse to UV-B
B0010335biological_processresponse to non-ionic osmotic stress
B0012505cellular_componentendomembrane system
B0015994biological_processchlorophyll metabolic process
B0016829molecular_functionlyase activity
B0036381molecular_functionpyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity
B0042538biological_processhyperosmotic salinity response
B0042803molecular_functionprotein homodimerization activity
B0042819biological_processvitamin B6 biosynthetic process
B0042823biological_processpyridoxal phosphate biosynthetic process
B0046982molecular_functionprotein heterodimerization activity
C0005515molecular_functionprotein binding
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0005886cellular_componentplasma membrane
C0006520biological_processamino acid metabolic process
C0006979biological_processresponse to oxidative stress
C0006982biological_processresponse to lipid hydroperoxide
C0009651biological_processresponse to salt stress
C0010224biological_processresponse to UV-B
C0010335biological_processresponse to non-ionic osmotic stress
C0012505cellular_componentendomembrane system
C0015994biological_processchlorophyll metabolic process
C0016829molecular_functionlyase activity
C0036381molecular_functionpyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity
C0042538biological_processhyperosmotic salinity response
C0042803molecular_functionprotein homodimerization activity
C0042819biological_processvitamin B6 biosynthetic process
C0042823biological_processpyridoxal phosphate biosynthetic process
C0046982molecular_functionprotein heterodimerization activity
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0005886cellular_componentplasma membrane
D0006520biological_processamino acid metabolic process
D0006979biological_processresponse to oxidative stress
D0006982biological_processresponse to lipid hydroperoxide
D0009651biological_processresponse to salt stress
D0010224biological_processresponse to UV-B
D0010335biological_processresponse to non-ionic osmotic stress
D0012505cellular_componentendomembrane system
D0015994biological_processchlorophyll metabolic process
D0016829molecular_functionlyase activity
D0036381molecular_functionpyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity
D0042538biological_processhyperosmotic salinity response
D0042803molecular_functionprotein homodimerization activity
D0042819biological_processvitamin B6 biosynthetic process
D0042823biological_processpyridoxal phosphate biosynthetic process
D0046982molecular_functionprotein heterodimerization activity
Functional Information from PROSITE/UniProt
site_idPS01235
Number of Residues19
DetailsPDXS_SNZ_1 PdxS/SNZ family signature. LPVVQFAAGGVATPADAAL
ChainResidueDetails
ALEU222-LEU240

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Schiff-base intermediate with D-ribose 5-phosphate => ECO:0000250|UniProtKB:O59080
ChainResidueDetails
ALYS98
BLYS98
CLYS98
DLYS98

site_idSWS_FT_FI2
Number of Residues16
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:O59080
ChainResidueDetails
AASP41
CGLY170
CGLY231
CGLY252
DASP41
DGLY170
DGLY231
DGLY252
AGLY170
AGLY231
AGLY252
BASP41
BGLY170
BGLY231
BGLY252
CASP41

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q03148
ChainResidueDetails
AARG182
BARG182
CARG182
DARG182

site_idSWS_FT_FI4
Number of Residues4
DetailsMOD_RES: N-acetylmethionine => ECO:0007744|PubMed:22223895
ChainResidueDetails
AMET2
BMET2
CMET2
DMET2

226707

PDB entries from 2024-10-30

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