5LNH

Structure of full length Unliganded CodY from Bacillus subtilis

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0000976	molecular_function	transcription cis-regulatory region binding
A	0001217	molecular_function	DNA-binding transcription repressor activity
A	0003677	molecular_function	DNA binding
A	0003700	molecular_function	DNA-binding transcription factor activity
A	0005515	molecular_function	protein binding
A	0005525	molecular_function	GTP binding
A	0005737	cellular_component	cytoplasm
A	0006355	biological_process	regulation of DNA-templated transcription
A	0032993	cellular_component	protein-DNA complex
A	0045892	biological_process	negative regulation of DNA-templated transcription
B	0000166	molecular_function	nucleotide binding
B	0000976	molecular_function	transcription cis-regulatory region binding
B	0001217	molecular_function	DNA-binding transcription repressor activity
B	0003677	molecular_function	DNA binding
B	0003700	molecular_function	DNA-binding transcription factor activity
B	0005515	molecular_function	protein binding
B	0005525	molecular_function	GTP binding
B	0005737	cellular_component	cytoplasm
B	0006355	biological_process	regulation of DNA-templated transcription
B	0032993	cellular_component	protein-DNA complex
B	0045892	biological_process	negative regulation of DNA-templated transcription
C	0000166	molecular_function	nucleotide binding
C	0000976	molecular_function	transcription cis-regulatory region binding
C	0001217	molecular_function	DNA-binding transcription repressor activity
C	0003677	molecular_function	DNA binding
C	0003700	molecular_function	DNA-binding transcription factor activity
C	0005515	molecular_function	protein binding
C	0005525	molecular_function	GTP binding
C	0005737	cellular_component	cytoplasm
C	0006355	biological_process	regulation of DNA-templated transcription
C	0032993	cellular_component	protein-DNA complex
C	0045892	biological_process	negative regulation of DNA-templated transcription
D	0000166	molecular_function	nucleotide binding
D	0000976	molecular_function	transcription cis-regulatory region binding
D	0001217	molecular_function	DNA-binding transcription repressor activity
D	0003677	molecular_function	DNA binding
D	0003700	molecular_function	DNA-binding transcription factor activity
D	0005515	molecular_function	protein binding
D	0005525	molecular_function	GTP binding
D	0005737	cellular_component	cytoplasm
D	0006355	biological_process	regulation of DNA-templated transcription
D	0032993	cellular_component	protein-DNA complex
D	0045892	biological_process	negative regulation of DNA-templated transcription
E	0000166	molecular_function	nucleotide binding
E	0000976	molecular_function	transcription cis-regulatory region binding
E	0001217	molecular_function	DNA-binding transcription repressor activity
E	0003677	molecular_function	DNA binding
E	0003700	molecular_function	DNA-binding transcription factor activity
E	0005515	molecular_function	protein binding
E	0005525	molecular_function	GTP binding
E	0005737	cellular_component	cytoplasm
E	0006355	biological_process	regulation of DNA-templated transcription
E	0032993	cellular_component	protein-DNA complex
E	0045892	biological_process	negative regulation of DNA-templated transcription
F	0000166	molecular_function	nucleotide binding
F	0000976	molecular_function	transcription cis-regulatory region binding
F	0001217	molecular_function	DNA-binding transcription repressor activity
F	0003677	molecular_function	DNA binding
F	0003700	molecular_function	DNA-binding transcription factor activity
F	0005515	molecular_function	protein binding
F	0005525	molecular_function	GTP binding
F	0005737	cellular_component	cytoplasm
F	0006355	biological_process	regulation of DNA-templated transcription
F	0032993	cellular_component	protein-DNA complex
F	0045892	biological_process	negative regulation of DNA-templated transcription
G	0000166	molecular_function	nucleotide binding
G	0000976	molecular_function	transcription cis-regulatory region binding
G	0001217	molecular_function	DNA-binding transcription repressor activity
G	0003677	molecular_function	DNA binding
G	0003700	molecular_function	DNA-binding transcription factor activity
G	0005515	molecular_function	protein binding
G	0005525	molecular_function	GTP binding
G	0005737	cellular_component	cytoplasm
G	0006355	biological_process	regulation of DNA-templated transcription
G	0032993	cellular_component	protein-DNA complex
G	0045892	biological_process	negative regulation of DNA-templated transcription
H	0000166	molecular_function	nucleotide binding
H	0000976	molecular_function	transcription cis-regulatory region binding
H	0001217	molecular_function	DNA-binding transcription repressor activity
H	0003677	molecular_function	DNA binding
H	0003700	molecular_function	DNA-binding transcription factor activity
H	0005515	molecular_function	protein binding
H	0005525	molecular_function	GTP binding
H	0005737	cellular_component	cytoplasm
H	0006355	biological_process	regulation of DNA-templated transcription
H	0032993	cellular_component	protein-DNA complex
H	0045892	biological_process	negative regulation of DNA-templated transcription
I	0000166	molecular_function	nucleotide binding
I	0000976	molecular_function	transcription cis-regulatory region binding
I	0001217	molecular_function	DNA-binding transcription repressor activity
I	0003677	molecular_function	DNA binding
I	0003700	molecular_function	DNA-binding transcription factor activity
I	0005515	molecular_function	protein binding
I	0005525	molecular_function	GTP binding
I	0005737	cellular_component	cytoplasm
I	0006355	biological_process	regulation of DNA-templated transcription
I	0032993	cellular_component	protein-DNA complex
I	0045892	biological_process	negative regulation of DNA-templated transcription
K	0000166	molecular_function	nucleotide binding
K	0000976	molecular_function	transcription cis-regulatory region binding
K	0001217	molecular_function	DNA-binding transcription repressor activity
K	0003677	molecular_function	DNA binding
K	0003700	molecular_function	DNA-binding transcription factor activity
K	0005515	molecular_function	protein binding
K	0005525	molecular_function	GTP binding
K	0005737	cellular_component	cytoplasm
K	0006355	biological_process	regulation of DNA-templated transcription
K	0032993	cellular_component	protein-DNA complex
K	0045892	biological_process	negative regulation of DNA-templated transcription

Functional Information from PDB Data

site_id	AC1
Number of Residues	3
Details	binding site for residue SO4 A 301

Chain	Residue
A	PRO115
A	ILE117
A	GLU144

---

site_id	AC2
Number of Residues	1
Details	binding site for residue SO4 A 302

Chain	Residue
A	ARG61

---

site_id	AC3
Number of Residues	4
Details	binding site for residue SO4 B 301

Chain	Residue
B	PRO115
B	ILE117
B	GLU144
G	GLN15

---

site_id	AC4
Number of Residues	3
Details	binding site for residue SO4 B 302

Chain	Residue
B	LYS64
B	PRO72
B	ARG61

---

site_id	AC5
Number of Residues	6
Details	binding site for residue SO4 C 301

Chain	Residue
C	PRO115
C	GLU144
C	ALA147
C	THR148
F	ASN11
F	GLN15

---

site_id	AC6
Number of Residues	4
Details	binding site for residue SO4 E 301

Chain	Residue
D	PRO115
D	THR148
E	ASN11
E	GLN15

---

site_id	AC7
Number of Residues	4
Details	binding site for residue SO4 E 302

Chain	Residue
D	ASN11
E	VAL114
E	PRO115
E	GLU144

---

site_id	AC8
Number of Residues	6
Details	binding site for residue SO4 F 301

Chain	Residue
F	VAL114
F	PRO115
F	ILE117
F	GLU144
F	ALA147
F	THR148

---

site_id	AC9
Number of Residues	8
Details	binding site for residue SO4 G 301

Chain	Residue
B	ASN11
G	THR85
G	VAL114
G	PRO115
G	ILE117
G	GLU144
G	ALA147
G	THR148

---

site_id	AD1
Number of Residues	5
Details	binding site for residue SO4 H 301

Chain	Residue
H	VAL114
H	PRO115
H	ILE117
H	GLU144
H	ALA147

---

site_id	AD2
Number of Residues	4
Details	binding site for residue SO4 I 301

Chain	Residue
I	VAL114
I	PRO115
I	ILE117
I	GLU144

---

site_id	AD3
Number of Residues	5
Details	binding site for residue SO4 K 301

Chain	Residue
K	VAL114
K	PRO115
K	ILE117
K	GLU144
K	THR148

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	190
Details	DNA binding: {"description":"H-T-H motif","evidences":[{"source":"PubMed","id":"15937175","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	20
Details	Binding site: {"evidences":[{"source":"PubMed","id":"16488888","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2GX5","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	30
Details	Binding site: {"evidences":[{"source":"PubMed","id":"16488888","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2HGV","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	10
Details	Binding site: {"evidences":[{"source":"PubMed","id":"28011634","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5LOE","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	10
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"17218307","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---