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5LMF

Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator bound to Dcp2 HLM3 peptide (region 484-500)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000290biological_processdeadenylation-dependent decapping of nuclear-transcribed mRNA
B0000290biological_processdeadenylation-dependent decapping of nuclear-transcribed mRNA
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MG A 1001
ChainResidue
AASP544
AASP544
AHOH1147
AHOH1147
AHOH1174
AHOH1174

site_idAC2
Number of Residues3
Detailsbinding site for residue CL A 1002
ChainResidue
AASN620
ASER755
AGLN756

site_idAC3
Number of Residues5
Detailsbinding site for residue EDO A 1003
ChainResidue
ASER675
AILE722
AGLU726
AHOH1117
BGLU685

site_idAC4
Number of Residues3
Detailsbinding site for residue EDO A 1004
ChainResidue
AGLU701
AGLU730
AHOH1149

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO A 1005
ChainResidue
AASN736
AGLU739
ATHR740
BLYS716

site_idAC6
Number of Residues2
Detailsbinding site for residue CL B 801
ChainResidue
BLEU578
BEDO807

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO B 802
ChainResidue
BPHE681
BPRO682
BASN687
BGLU701
BGLU730

site_idAC8
Number of Residues3
Detailsbinding site for residue EDO B 803
ChainResidue
BASP700
BALA702
BTYR703

site_idAC9
Number of Residues7
Detailsbinding site for residue EDO B 804
ChainResidue
AASP530
ALYS534
BTYR767
BGLU770
BLYS771
BGLN774
BHOH906

site_idAD1
Number of Residues4
Detailsbinding site for residue EDO B 805
ChainResidue
BTYR773
BTYR787
BASP789
BGLY790

site_idAD2
Number of Residues8
Detailsbinding site for residue EDO B 806
ChainResidue
BSER568
BTHR626
BSER627
BLYS628
BPRO682
BTYR686
BTYR703
BHOH902

site_idAD3
Number of Residues6
Detailsbinding site for residue EDO B 807
ChainResidue
ATHR671
BLYS575
BPRO576
BTHR577
BHIS689
BCL801

Functional Information from PROSITE/UniProt
site_idPS00018
Number of Residues13
DetailsEF_HAND_1 EF-hand calcium-binding domain. DSSRSNILSspEI
ChainResidueDetails
AASP647-ILE659

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:19779198
ChainResidueDetails
ASER456
ASER457
BSER456
BSER457

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PDB entries from 2025-06-25

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