Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5LFA

Crystal structure of iron-sulfur cluster containing bacterial (6-4) photolyase PhrB - Y424F mutant with impaired DNA repair activity

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000719biological_processphotoreactive repair
A0003677molecular_functionDNA binding
A0003914molecular_functionDNA (6-4) photolyase activity
A0006281biological_processDNA repair
A0016829molecular_functionlyase activity
A0046872molecular_functionmetal ion binding
A0051539molecular_function4 iron, 4 sulfur cluster binding
A0071949molecular_functionFAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues27
Detailsbinding site for residue FAD A 601
ChainResidue
APHE249
AILE307
AARG311
ATYR363
AALA364
AHIS365
AHIS366
AARG369
ALEU370
ATYR391
AASP397
AHIS265
AALA398
AVAL402
AGLU403
AASN406
AVAL407
AHOH718
AHOH720
AHOH747
ASER266
ALEU267
ALEU268
ASER269
AASN273
APHE303
AGLN306

site_idAC2
Number of Residues19
Detailsbinding site for residue DLZ A 602
ChainResidue
ALEU8
AGLY9
AASP10
ACYS32
AGLU33
AVAL34
AGLU37
AALA38
ATYR40
AHIS43
AILE51
APHE52
AMET55
APHE83
APRO104
AGLY105
AGLU106
ATYR399
AHOH711

site_idAC3
Number of Residues5
Detailsbinding site for residue SF4 A 603
ChainResidue
ACYS350
AILE431
ACYS438
ACYS441
ACYS454

site_idAC4
Number of Residues3
Detailsbinding site for residue GOL A 604
ChainResidue
ATHR346
AHIS347
ATYR443

site_idAC5
Number of Residues4
Detailsbinding site for residue GOL A 605
ChainResidue
AARG56
AGLU60
AARG63
ATYR71

site_idAC6
Number of Residues4
Detailsbinding site for residue GOL A 606
ChainResidue
AARG192
ALYS194
AHOH774
AHOH784

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:23589886, ECO:0007744|PDB:4DJA
ChainResidueDetails
AGLY9
ACYS438
ACYS441
ACYS454
ACYS32
AGLY105
AHIS265
AASN273
ACYS350
ATYR363
AASP397
AASN406

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon