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5LEX

Native human 20S proteasome in Mg-Acetate at 2.2 Angstrom

Functional Information from GO Data
ChainGOidnamespacecontents
a0005839cellular_componentproteasome core complex
a0051603biological_processproteolysis involved in protein catabolic process
A0000502cellular_componentproteasome complex
A0000932cellular_componentP-body
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005839cellular_componentproteasome core complex
A0006511biological_processubiquitin-dependent protein catabolic process
A0009615biological_processresponse to virus
A0019773cellular_componentproteasome core complex, alpha-subunit complex
A0034774cellular_componentsecretory granule lumen
A0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
A0051603biological_processproteolysis involved in protein catabolic process
A0070062cellular_componentextracellular exosome
A1904813cellular_componentficolin-1-rich granule lumen
b0004298molecular_functionthreonine-type endopeptidase activity
b0005839cellular_componentproteasome core complex
b0051603biological_processproteolysis involved in protein catabolic process
B0000502cellular_componentproteasome complex
B0000932cellular_componentP-body
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005839cellular_componentproteasome core complex
B0006511biological_processubiquitin-dependent protein catabolic process
B0019773cellular_componentproteasome core complex, alpha-subunit complex
B0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
B0043231cellular_componentintracellular membrane-bounded organelle
B0051603biological_processproteolysis involved in protein catabolic process
B0070062cellular_componentextracellular exosome
C0000502cellular_componentproteasome complex
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005654cellular_componentnucleoplasm
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0005839cellular_componentproteasome core complex
C0006511biological_processubiquitin-dependent protein catabolic process
C0019773cellular_componentproteasome core complex, alpha-subunit complex
C0042802molecular_functionidentical protein binding
C0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
C0051603biological_processproteolysis involved in protein catabolic process
C0070062cellular_componentextracellular exosome
C0098794cellular_componentpostsynapse
D0000502cellular_componentproteasome complex
D0005515molecular_functionprotein binding
D0005576cellular_componentextracellular region
D0005634cellular_componentnucleus
D0005654cellular_componentnucleoplasm
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0005839cellular_componentproteasome core complex
D0006511biological_processubiquitin-dependent protein catabolic process
D0019773cellular_componentproteasome core complex, alpha-subunit complex
D0034774cellular_componentsecretory granule lumen
D0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
D0051603biological_processproteolysis involved in protein catabolic process
D0070062cellular_componentextracellular exosome
D1904813cellular_componentficolin-1-rich granule lumen
E0000502cellular_componentproteasome complex
E0001530molecular_functionlipopolysaccharide binding
E0002376biological_processimmune system process
E0002862biological_processnegative regulation of inflammatory response to antigenic stimulus
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005654cellular_componentnucleoplasm
E0005737cellular_componentcytoplasm
E0005813cellular_componentcentrosome
E0005829cellular_componentcytosol
E0005839cellular_componentproteasome core complex
E0006511biological_processubiquitin-dependent protein catabolic process
E0019773cellular_componentproteasome core complex, alpha-subunit complex
E0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
E0051603biological_processproteolysis involved in protein catabolic process
E0070062cellular_componentextracellular exosome
F0000502cellular_componentproteasome complex
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005654cellular_componentnucleoplasm
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0005839cellular_componentproteasome core complex
F0006511biological_processubiquitin-dependent protein catabolic process
F0019773cellular_componentproteasome core complex, alpha-subunit complex
F0031625molecular_functionubiquitin protein ligase binding
F0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
F0045202cellular_componentsynapse
F0051603biological_processproteolysis involved in protein catabolic process
F0052548biological_processregulation of endopeptidase activity
F0070062cellular_componentextracellular exosome
G0000502cellular_componentproteasome complex
G0000932cellular_componentP-body
G0003723molecular_functionRNA binding
G0004175molecular_functionendopeptidase activity
G0005515molecular_functionprotein binding
G0005634cellular_componentnucleus
G0005654cellular_componentnucleoplasm
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0005839cellular_componentproteasome core complex
G0005840cellular_componentribosome
G0006511biological_processubiquitin-dependent protein catabolic process
G0016363cellular_componentnuclear matrix
G0019773cellular_componentproteasome core complex, alpha-subunit complex
G0030016cellular_componentmyofibril
G0030017cellular_componentsarcomere
G0035639molecular_functionpurine ribonucleoside triphosphate binding
G0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
G0050727biological_processregulation of inflammatory response
G0051059molecular_functionNF-kappaB binding
G0051092biological_processpositive regulation of NF-kappaB transcription factor activity
G0051603biological_processproteolysis involved in protein catabolic process
G0070062cellular_componentextracellular exosome
H0004298molecular_functionthreonine-type endopeptidase activity
H0005839cellular_componentproteasome core complex
H0051603biological_processproteolysis involved in protein catabolic process
I0000502cellular_componentproteasome complex
I0005515molecular_functionprotein binding
I0005634cellular_componentnucleus
I0005654cellular_componentnucleoplasm
I0005737cellular_componentcytoplasm
I0005829cellular_componentcytosol
I0005839cellular_componentproteasome core complex
I0019774cellular_componentproteasome core complex, beta-subunit complex
I0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
I0051603biological_processproteolysis involved in protein catabolic process
I0070062cellular_componentextracellular exosome
J0000502cellular_componentproteasome complex
J0005515molecular_functionprotein binding
J0005634cellular_componentnucleus
J0005654cellular_componentnucleoplasm
J0005737cellular_componentcytoplasm
J0005829cellular_componentcytosol
J0005839cellular_componentproteasome core complex
J0010243biological_processresponse to organonitrogen compound
J0010498biological_processproteasomal protein catabolic process
J0014070biological_processresponse to organic cyclic compound
J0016020cellular_componentmembrane
J0019774cellular_componentproteasome core complex, beta-subunit complex
J0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
J0051603biological_processproteolysis involved in protein catabolic process
J0070062cellular_componentextracellular exosome
K0004298molecular_functionthreonine-type endopeptidase activity
K0005839cellular_componentproteasome core complex
K0051603biological_processproteolysis involved in protein catabolic process
L0005839cellular_componentproteasome core complex
L0051603biological_processproteolysis involved in protein catabolic process
M0005839cellular_componentproteasome core complex
M0051603biological_processproteolysis involved in protein catabolic process
N0004298molecular_functionthreonine-type endopeptidase activity
N0005839cellular_componentproteasome core complex
N0051603biological_processproteolysis involved in protein catabolic process
O0000502cellular_componentproteasome complex
O0000932cellular_componentP-body
O0005515molecular_functionprotein binding
O0005576cellular_componentextracellular region
O0005634cellular_componentnucleus
O0005654cellular_componentnucleoplasm
O0005737cellular_componentcytoplasm
O0005829cellular_componentcytosol
O0005839cellular_componentproteasome core complex
O0006511biological_processubiquitin-dependent protein catabolic process
O0009615biological_processresponse to virus
O0019773cellular_componentproteasome core complex, alpha-subunit complex
O0034774cellular_componentsecretory granule lumen
O0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
O0051603biological_processproteolysis involved in protein catabolic process
O0070062cellular_componentextracellular exosome
O1904813cellular_componentficolin-1-rich granule lumen
P0000502cellular_componentproteasome complex
P0000932cellular_componentP-body
P0005515molecular_functionprotein binding
P0005634cellular_componentnucleus
P0005654cellular_componentnucleoplasm
P0005737cellular_componentcytoplasm
P0005829cellular_componentcytosol
P0005839cellular_componentproteasome core complex
P0006511biological_processubiquitin-dependent protein catabolic process
P0019773cellular_componentproteasome core complex, alpha-subunit complex
P0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
P0043231cellular_componentintracellular membrane-bounded organelle
P0051603biological_processproteolysis involved in protein catabolic process
P0070062cellular_componentextracellular exosome
Q0000502cellular_componentproteasome complex
Q0005515molecular_functionprotein binding
Q0005634cellular_componentnucleus
Q0005654cellular_componentnucleoplasm
Q0005737cellular_componentcytoplasm
Q0005829cellular_componentcytosol
Q0005839cellular_componentproteasome core complex
Q0006511biological_processubiquitin-dependent protein catabolic process
Q0019773cellular_componentproteasome core complex, alpha-subunit complex
Q0042802molecular_functionidentical protein binding
Q0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
Q0051603biological_processproteolysis involved in protein catabolic process
Q0070062cellular_componentextracellular exosome
Q0098794cellular_componentpostsynapse
R0000502cellular_componentproteasome complex
R0005515molecular_functionprotein binding
R0005576cellular_componentextracellular region
R0005634cellular_componentnucleus
R0005654cellular_componentnucleoplasm
R0005737cellular_componentcytoplasm
R0005829cellular_componentcytosol
R0005839cellular_componentproteasome core complex
R0006511biological_processubiquitin-dependent protein catabolic process
R0019773cellular_componentproteasome core complex, alpha-subunit complex
R0034774cellular_componentsecretory granule lumen
R0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
R0051603biological_processproteolysis involved in protein catabolic process
R0070062cellular_componentextracellular exosome
R1904813cellular_componentficolin-1-rich granule lumen
S0000502cellular_componentproteasome complex
S0001530molecular_functionlipopolysaccharide binding
S0002376biological_processimmune system process
S0002862biological_processnegative regulation of inflammatory response to antigenic stimulus
S0005515molecular_functionprotein binding
S0005634cellular_componentnucleus
S0005654cellular_componentnucleoplasm
S0005737cellular_componentcytoplasm
S0005813cellular_componentcentrosome
S0005829cellular_componentcytosol
S0005839cellular_componentproteasome core complex
S0006511biological_processubiquitin-dependent protein catabolic process
S0019773cellular_componentproteasome core complex, alpha-subunit complex
S0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
S0051603biological_processproteolysis involved in protein catabolic process
S0070062cellular_componentextracellular exosome
T0000502cellular_componentproteasome complex
T0005515molecular_functionprotein binding
T0005634cellular_componentnucleus
T0005654cellular_componentnucleoplasm
T0005737cellular_componentcytoplasm
T0005829cellular_componentcytosol
T0005839cellular_componentproteasome core complex
T0006511biological_processubiquitin-dependent protein catabolic process
T0019773cellular_componentproteasome core complex, alpha-subunit complex
T0031625molecular_functionubiquitin protein ligase binding
T0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
T0045202cellular_componentsynapse
T0051603biological_processproteolysis involved in protein catabolic process
T0052548biological_processregulation of endopeptidase activity
T0070062cellular_componentextracellular exosome
U0000502cellular_componentproteasome complex
U0000932cellular_componentP-body
U0003723molecular_functionRNA binding
U0004175molecular_functionendopeptidase activity
U0005515molecular_functionprotein binding
U0005634cellular_componentnucleus
U0005654cellular_componentnucleoplasm
U0005737cellular_componentcytoplasm
U0005829cellular_componentcytosol
U0005839cellular_componentproteasome core complex
U0005840cellular_componentribosome
U0006511biological_processubiquitin-dependent protein catabolic process
U0016363cellular_componentnuclear matrix
U0019773cellular_componentproteasome core complex, alpha-subunit complex
U0030016cellular_componentmyofibril
U0030017cellular_componentsarcomere
U0035639molecular_functionpurine ribonucleoside triphosphate binding
U0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
U0050727biological_processregulation of inflammatory response
U0051059molecular_functionNF-kappaB binding
U0051092biological_processpositive regulation of NF-kappaB transcription factor activity
U0051603biological_processproteolysis involved in protein catabolic process
U0070062cellular_componentextracellular exosome
V0004298molecular_functionthreonine-type endopeptidase activity
V0005839cellular_componentproteasome core complex
V0051603biological_processproteolysis involved in protein catabolic process
W0000502cellular_componentproteasome complex
W0005515molecular_functionprotein binding
W0005634cellular_componentnucleus
W0005654cellular_componentnucleoplasm
W0005737cellular_componentcytoplasm
W0005829cellular_componentcytosol
W0005839cellular_componentproteasome core complex
W0019774cellular_componentproteasome core complex, beta-subunit complex
W0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
W0051603biological_processproteolysis involved in protein catabolic process
W0070062cellular_componentextracellular exosome
X0000502cellular_componentproteasome complex
X0005515molecular_functionprotein binding
X0005634cellular_componentnucleus
X0005654cellular_componentnucleoplasm
X0005737cellular_componentcytoplasm
X0005829cellular_componentcytosol
X0005839cellular_componentproteasome core complex
X0010243biological_processresponse to organonitrogen compound
X0010498biological_processproteasomal protein catabolic process
X0014070biological_processresponse to organic cyclic compound
X0016020cellular_componentmembrane
X0019774cellular_componentproteasome core complex, beta-subunit complex
X0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
X0051603biological_processproteolysis involved in protein catabolic process
X0070062cellular_componentextracellular exosome
Y0004298molecular_functionthreonine-type endopeptidase activity
Y0005839cellular_componentproteasome core complex
Y0051603biological_processproteolysis involved in protein catabolic process
Z0005839cellular_componentproteasome core complex
Z0051603biological_processproteolysis involved in protein catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue K G 301
ChainResidue
GTHR14
GTYR125
GASN128
GMET131
GHOH423

site_idAC2
Number of Residues5
Detailsbinding site for residue MG H 301
ChainResidue
ZASP213
HILE163
HASP166
HSER169
HHOH486

site_idAC3
Number of Residues2
Detailsbinding site for residue 1PE H 302
ChainResidue
HTYR90
IGLU96

site_idAC4
Number of Residues5
Detailsbinding site for residue MG I 301
ChainResidue
IVAL174
IASP177
ISER180
IHOH456
IHOH458

site_idAC5
Number of Residues3
Detailsbinding site for residue 1PE I 302
ChainResidue
IGLU96
ILYS97
JASP90

site_idAC6
Number of Residues5
Detailsbinding site for residue MG I 303
ChainResidue
IASP204
YTHR164
YASP167
YSER170
YHOH492

site_idAC7
Number of Residues6
Detailsbinding site for residue MG J 301
ChainResidue
JHOH407
JHOH426
JHOH466
JHOH503
JHOH513
KHOH476

site_idAC8
Number of Residues5
Detailsbinding site for residue MG K 301
ChainResidue
KTHR164
KASP167
KSER170
KHOH443
WASP204

site_idAC9
Number of Residues2
Detailsbinding site for residue 1PE K 302
ChainResidue
KHOH449
LPHE101

site_idAD1
Number of Residues3
Detailsbinding site for residue 1PE L 301
ChainResidue
LPHE33
MTYR141
bTHR22

site_idAD2
Number of Residues4
Detailsbinding site for residue K L 302
ChainResidue
LALA183
LASP186
LTHR189
LHOH433

site_idAD3
Number of Residues5
Detailsbinding site for residue MG L 303
ChainResidue
LASP213
VILE163
VASP166
VSER169
VHOH457

site_idAD4
Number of Residues6
Detailsbinding site for residue 1PE N 301
ChainResidue
GTYR103
HPHE88
NTYR90
NHOH422
NHOH460
NHOH518

site_idAD5
Number of Residues5
Detailsbinding site for residue K N 302
ChainResidue
NMET164
NASP167
NSER170
NHOH501
NHOH540

site_idAD6
Number of Residues5
Detailsbinding site for residue K U 301
ChainResidue
UTHR14
UTYR125
UASN128
UMET131
UHOH448

site_idAD7
Number of Residues7
Detailsbinding site for residue MG V 301
ChainResidue
VGLN91
VHOH432
VHOH487
bASP51
bHOH408
bHOH409
bHOH442

site_idAD8
Number of Residues5
Detailsbinding site for residue MG W 301
ChainResidue
WVAL174
WASP177
WSER180
WHOH434
WHOH448

site_idAD9
Number of Residues4
Detailsbinding site for residue 1PE W 302
ChainResidue
WGLU96
WLYS97
WHOH426
WHOH440

site_idAE1
Number of Residues6
Detailsbinding site for residue MG X 301
ChainResidue
XHOH401
XHOH403
XHOH444
XHOH499
XHOH507
YHOH512

site_idAE2
Number of Residues3
Detailsbinding site for residue 1PE Z 301
ChainResidue
ZTYR97
ZSER98
ZHOH460

site_idAE3
Number of Residues4
Detailsbinding site for residue K Z 302
ChainResidue
ZALA183
ZASP186
ZTHR189
ZHOH418

site_idAE4
Number of Residues6
Detailsbinding site for residue 1PE a 301
ChainResidue
aHOH429
aHOH487
NTHR22
ZPHE33
aTYR141
aTYR144

site_idAE5
Number of Residues6
Detailsbinding site for residue 1PE b 301
ChainResidue
UTYR103
VPHE88
VGLN91
bALA58
bTYR61
bHOH511

site_idAE6
Number of Residues5
Detailsbinding site for residue K b 302
ChainResidue
bMET164
bASP167
bSER170
bHOH466
bHOH508

site_idAE7
Number of Residues12
Detailsbinding site for Ligand residues 6V1 E 148 through PRO E 149 bound to THR E 147
ChainResidue
EVAL29
EPRO127
ETYR128
EVAL130
EGLN146
ETHR147
ESER150
EALA151
EASN152
EHOH308
EHOH337
EHOH343

site_idAE8
Number of Residues13
Detailsbinding site for Ligand residues 6V1 S 148 through PRO S 149 bound to THR S 147
ChainResidue
SMET26
SVAL29
SPRO127
STYR128
SVAL130
SGLN146
STHR147
SSER150
SALA151
SASN152
SHOH344
SHOH346
SHOH348

site_idAE9
Number of Residues10
Detailsbinding site for Di-peptide ASP U 46 and 6V1 U 47
ChainResidue
UGLY44
ULYS45
UALA48
UPRO149
UTHR194
UVAL195
UVAL220
UTHR221
UVAL222
UHOH402

site_idAF1
Number of Residues9
Detailsbinding site for Di-peptide 6V1 U 47 and ALA U 48
ChainResidue
UVAL42
UGLY44
UASP46
UVAL49
UPRO149
UTHR194
UVAL195
UVAL219
UVAL220

site_idAF2
Number of Residues11
Detailsbinding site for Di-peptide TYR U 160 and 6V1 U 161
ChainResidue
OLYS50
OTYR56
OASP57
OSER60
OVAL61
ULYS116
UTYR152
ULYS153
UTYR159
UGLY162
UPHE163

site_idAF3
Number of Residues9
Detailsbinding site for Di-peptide 6V1 U 161 and GLY U 162
ChainResidue
OLYS50
OTYR56
OASP57
OSER60
UVAL151
UTYR152
ULYS153
UTYR160
UPHE163

site_idAF4
Number of Residues15
Detailsbinding site for Di-peptide ASP X 90 and 6V1 X 91
ChainResidue
WARG65
XPHE56
XTYR59
XARG86
XASN87
XLEU88
XALA89
XLEU92
XARG93
XSER94
XTHR96
XPRO97
XTYR98
XHOH416
XHOH423

site_idAF5
Number of Residues12
Detailsbinding site for Di-peptide 6V1 X 91 and LEU X 92
ChainResidue
XPHE56
XTYR59
XASN87
XLEU88
XALA89
XASP90
XARG93
XSER94
XTHR96
XPRO97
XTYR98
XHOH408

Functional Information from PROSITE/UniProt
site_idPS00388
Number of Residues23
DetailsPROTEASOME_ALPHA_1 Proteasome alpha-type subunits signature. YdsrtTiFSPeGRlyQVEYAmeA
ChainResidueDetails
BTYR5-ALA27
GPHE9-ALA31
DTYR8-ALA30
ETYR6-ALA28
FTYR7-ALA29
CTYR3-ALA25
ATYR5-ALA27

site_idPS00854
Number of Residues48
DetailsPROTEASOME_BETA_1 Proteasome beta-type subunits signature. LGIlAndGVLLAAErrnihklldevffse.KiyklnedmacsvaGitSD
ChainResidueDetails
BLEU35-ASP82
LLEU13-ASP60
bMET4-ASP51
KLEU4-ASP51
aLEU12-ASP59
IMET11-ASP58
HALA4-ASP51
JILE5-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000269|PubMed:25599644, ECO:0000269|PubMed:27493187
ChainResidueDetails
NTHR1
bTHR1
LSER134
ZSER34
ZSER40
ZSER134

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163
ChainResidueDetails
NTHR35
bTHR35
ULYS102
ULYS104
TLYS205
TLYS229

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
LLYS176
ZLYS176
PLYS127
PLYS176
OSER13
OSER15

site_idSWS_FT_FI4
Number of Residues4
DetailsCARBOHYD: O-linked (GlcNAc) serine => ECO:0000250
ChainResidueDetails
LSER30
LSER181
ZSER30
ZSER181

site_idSWS_FT_FI5
Number of Residues6
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)
ChainResidueDetails
ELYS115
RSER63
ELYS208
SLYS115
SLYS208

site_idSWS_FT_FI6
Number of Residues2
DetailsCARBOHYD: O-linked (GlcNAc) serine => ECO:0000250
ChainResidueDetails
DSER198
RSER198

site_idSWS_FT_FI7
Number of Residues2
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P17220
ChainResidueDetails
ATYR120
OTYR120

221716

PDB entries from 2024-06-26

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